miRNA display CGI


Results 61 - 80 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 117928 0.77 0.302827
Target:  5'- cAGCGGaUAGCAGCAacGCGaGCGgUGACGGCg -3'
miRNA:   3'- -UCGCC-GUUGUCGU--CGC-CGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 59610 0.77 0.316537
Target:  5'- uAGUGGCGGCGGCcccGGCGGCGaccGCGGCu -3'
miRNA:   3'- -UCGCCGUUGUCG---UCGCCGCac-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 191075 0.76 0.33797
Target:  5'- cGCGGCGACcgugguGGCGGCGGCG-GGCuGCg -3'
miRNA:   3'- uCGCCGUUG------UCGUCGCCGCaCUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 6501 0.76 0.345345
Target:  5'- aGGCGGUGACGGCAGaGGCucaccgGUGACGAg -3'
miRNA:   3'- -UCGCCGUUGUCGUCgCCG------CACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 108029 0.76 0.345345
Target:  5'- cGuCGGCGucaGGCGGCGGCGgGAUGACg -3'
miRNA:   3'- uC-GCCGUug-UCGUCGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 110847 0.76 0.350576
Target:  5'- cAGCGGCAGCgacggugcacguagAGCAGCGGCcc-GCGGCa -3'
miRNA:   3'- -UCGCCGUUG--------------UCGUCGCCGcacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 151450 0.76 0.352835
Target:  5'- uGCGGCGACAGguGaCGauaGCGUGuCGACg -3'
miRNA:   3'- uCGCCGUUGUCguC-GC---CGCACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 123711 0.76 0.352835
Target:  5'- aGGCGGCGGCuG-AGCGGCGgaGGCGGCc -3'
miRNA:   3'- -UCGCCGUUGuCgUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 123548 0.76 0.352835
Target:  5'- gAGcCGGCAccacggccgacgACGGCGGUGGCGggaUGGCGGCg -3'
miRNA:   3'- -UC-GCCGU------------UGUCGUCGCCGC---ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 210434 0.76 0.360439
Target:  5'- gGGCGGCGACGGCAGCGuacUGUGcuACGAg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCc--GCAC--UGCUg -5'
14197 3' -58.5 NC_003521.1 + 132427 0.76 0.375987
Target:  5'- uGCGGCGACgccgcuGGUAGCGGUG-GugGGCu -3'
miRNA:   3'- uCGCCGUUG------UCGUCGCCGCaCugCUG- -5'
14197 3' -58.5 NC_003521.1 + 123174 0.75 0.391982
Target:  5'- aGGUGGCGGCGGCGGCGGgG-GACcguaGGCc -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCgCaCUG----CUG- -5'
14197 3' -58.5 NC_003521.1 + 52037 0.75 0.399322
Target:  5'- uGUGGCGgggacccagacgaGCAGCAGCGGCa-GAUGACg -3'
miRNA:   3'- uCGCCGU-------------UGUCGUCGCCGcaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 198209 0.75 0.400143
Target:  5'- uGGCGGCGACGGCgccgccGGCGGcCGUGGuaauaGACu -3'
miRNA:   3'- -UCGCCGUUGUCG------UCGCC-GCACUg----CUG- -5'
14197 3' -58.5 NC_003521.1 + 155257 0.75 0.400143
Target:  5'- gGGgGGCGGCGGCGGCGGCGccucaGGCc -3'
miRNA:   3'- -UCgCCGUUGUCGUCGCCGCacug-CUG- -5'
14197 3' -58.5 NC_003521.1 + 238082 0.75 0.400143
Target:  5'- uGCaGUAGCAGCAGCcagccagcgaGGCGgUGACGGCg -3'
miRNA:   3'- uCGcCGUUGUCGUCG----------CCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 28252 0.75 0.408412
Target:  5'- aAGaCGGCGccgagaggaACAGCGGCGGCGaUGACaGCa -3'
miRNA:   3'- -UC-GCCGU---------UGUCGUCGCCGC-ACUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 197271 0.75 0.408412
Target:  5'- cGCGGCGcCGGCGGCGGgGagcgggagGGCGGCu -3'
miRNA:   3'- uCGCCGUuGUCGUCGCCgCa-------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 98250 0.75 0.408412
Target:  5'- gGGCGGCcACGGCGGgcacggcgagccUGGCG-GGCGACa -3'
miRNA:   3'- -UCGCCGuUGUCGUC------------GCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 122612 0.75 0.408412
Target:  5'- -cCGGCGACGGCGGCGGCcgcgcgcucGGCGGCc -3'
miRNA:   3'- ucGCCGUUGUCGUCGCCGca-------CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.