miRNA display CGI


Results 81 - 100 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 145582 0.75 0.416788
Target:  5'- uGCGGCGGCAcgacGCGGCGGcCGUGGCc-- -3'
miRNA:   3'- uCGCCGUUGU----CGUCGCC-GCACUGcug -5'
14197 3' -58.5 NC_003521.1 + 143358 0.75 0.425267
Target:  5'- cGCGGguGagaAGCGGCGGCaacGACGACg -3'
miRNA:   3'- uCGCCguUg--UCGUCGCCGca-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 103645 0.75 0.425267
Target:  5'- cAGCGGgGGCAGCucGGCGGCGgccgcuGCGGCc -3'
miRNA:   3'- -UCGCCgUUGUCG--UCGCCGCac----UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 167035 0.75 0.425267
Target:  5'- -uCGGuCAGCucgGGCAGCGGCGUGGCG-Cu -3'
miRNA:   3'- ucGCC-GUUG---UCGUCGCCGCACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 116880 0.75 0.425267
Target:  5'- cAGUGGCGcgGCuGCGGCGGCGcGcCGGCg -3'
miRNA:   3'- -UCGCCGU--UGuCGUCGCCGCaCuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 77697 0.74 0.433848
Target:  5'- uGGCGaaGACAGCcguGGCGGCGUuguuGGCGACg -3'
miRNA:   3'- -UCGCcgUUGUCG---UCGCCGCA----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 148445 0.74 0.433848
Target:  5'- cGGCGgaGCGACGGCAGCGgGCGagcgGACGGg -3'
miRNA:   3'- -UCGC--CGUUGUCGUCGC-CGCa---CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 141364 0.74 0.442529
Target:  5'- uGCGGCGGCGGUcggugacGCGGUGcccgaUGACGACa -3'
miRNA:   3'- uCGCCGUUGUCGu------CGCCGC-----ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 6201 0.74 0.442529
Target:  5'- uGCGGCAAguGacuguGCGGCaUGACGGCg -3'
miRNA:   3'- uCGCCGUUguCgu---CGCCGcACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 187158 0.74 0.442529
Target:  5'- cGGCGGCGGCAGgAGCGGaagcaaCGUgcggaGACGGCc -3'
miRNA:   3'- -UCGCCGUUGUCgUCGCC------GCA-----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 172072 0.74 0.442529
Target:  5'- uGCGuCAGgaccguCAGCGGCGGCGUGAUGAa -3'
miRNA:   3'- uCGCcGUU------GUCGUCGCCGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 216828 0.74 0.450425
Target:  5'- uGGCGcGCAggaggucGCAGCccGCGGCG-GACGACu -3'
miRNA:   3'- -UCGC-CGU-------UGUCGu-CGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 120926 0.74 0.451307
Target:  5'- uGCGGCugcccGCGGCGGCGGCuccGGCGAg -3'
miRNA:   3'- uCGCCGu----UGUCGUCGCCGca-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 102986 0.74 0.46018
Target:  5'- gGGCGGCc-CAGCcGCGGCGUGAgCGcCu -3'
miRNA:   3'- -UCGCCGuuGUCGuCGCCGCACU-GCuG- -5'
14197 3' -58.5 NC_003521.1 + 123642 0.74 0.46018
Target:  5'- gGGCGGCGGCAGCGaCGGCGgguuaGGCu -3'
miRNA:   3'- -UCGCCGUUGUCGUcGCCGCacug-CUG- -5'
14197 3' -58.5 NC_003521.1 + 58819 0.74 0.46018
Target:  5'- gAGCaGGCAGCGcGUGGCGGCcGUGACGu- -3'
miRNA:   3'- -UCG-CCGUUGU-CGUCGCCG-CACUGCug -5'
14197 3' -58.5 NC_003521.1 + 7737 0.74 0.469144
Target:  5'- gGGCGGCGcgAGCGGCGGa--GGCGGCg -3'
miRNA:   3'- -UCGCCGUugUCGUCGCCgcaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 77394 0.74 0.469144
Target:  5'- cGGUGGCAcccugguaGGCAGCGGCagccGACGACg -3'
miRNA:   3'- -UCGCCGUug------UCGUCGCCGca--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 125716 0.74 0.478197
Target:  5'- cGGCGGUcacGACGGgGGCGGC--GACGGCg -3'
miRNA:   3'- -UCGCCG---UUGUCgUCGCCGcaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 216915 0.73 0.487335
Target:  5'- cGCGGUGGCAGCGGaGGCG-GuCGACc -3'
miRNA:   3'- uCGCCGUUGUCGUCgCCGCaCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.