miRNA display CGI


Results 101 - 120 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 109340 0.73 0.496554
Target:  5'- aGGCGGCAGCAGC--CGGCGcagGAggcCGACg -3'
miRNA:   3'- -UCGCCGUUGUCGucGCCGCa--CU---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 168147 0.73 0.505852
Target:  5'- aGGUGGCcACGGCcuGCGGCGUauGCGGCa -3'
miRNA:   3'- -UCGCCGuUGUCGu-CGCCGCAc-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 168361 0.73 0.505852
Target:  5'- gAGCGGCGcguaGCGGCAGuCGGCG-GGCa-- -3'
miRNA:   3'- -UCGCCGU----UGUCGUC-GCCGCaCUGcug -5'
14197 3' -58.5 NC_003521.1 + 192814 0.73 0.505852
Target:  5'- cGCuGGCAGCAGCcgcagaagcccGGCGGCGcguccGugGACg -3'
miRNA:   3'- uCG-CCGUUGUCG-----------UCGCCGCa----CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 55921 0.73 0.505852
Target:  5'- cGGCGGCAACGGgggugcCAGCGGgGUaugaggccucuGugGACg -3'
miRNA:   3'- -UCGCCGUUGUC------GUCGCCgCA-----------CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 98214 0.73 0.505852
Target:  5'- uGuCGGCG--GGCAGCGGCGUGGgaGGCg -3'
miRNA:   3'- uC-GCCGUugUCGUCGCCGCACUg-CUG- -5'
14197 3' -58.5 NC_003521.1 + 122655 0.73 0.505852
Target:  5'- cGGCgGGCGucgucuGCGGCGGUGGgGUGGCGuCg -3'
miRNA:   3'- -UCG-CCGU------UGUCGUCGCCgCACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 148560 0.73 0.515223
Target:  5'- cGGcCGGUAGCGGCAGCGGCacccagggaggGUcGACGGg -3'
miRNA:   3'- -UC-GCCGUUGUCGUCGCCG-----------CA-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 203716 0.73 0.515223
Target:  5'- uAGCGaCGGCAGCAGCaGCcggGGCGACa -3'
miRNA:   3'- -UCGCcGUUGUCGUCGcCGca-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 171679 0.73 0.524664
Target:  5'- cGGCGGCAugAcgAGCaacaaGCGUGACGACa -3'
miRNA:   3'- -UCGCCGUugUcgUCGc----CGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 17144 0.73 0.524664
Target:  5'- gAGUGGUucCAGCAGCGGCGcGA-GGCc -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCGCaCUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 5512 0.72 0.53417
Target:  5'- -uCGGCAggaguaGCAGCAGCGaCGgUGACGGCa -3'
miRNA:   3'- ucGCCGU------UGUCGUCGCcGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 218428 0.72 0.53417
Target:  5'- uGGCcaGCGACAGCGGCGGCaccacgGAgGACa -3'
miRNA:   3'- -UCGc-CGUUGUCGUCGCCGca----CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 163921 0.72 0.53417
Target:  5'- uGCGGCGGCAGCGGCaacgaaagaGGCGagGAgGAg -3'
miRNA:   3'- uCGCCGUUGUCGUCG---------CCGCa-CUgCUg -5'
14197 3' -58.5 NC_003521.1 + 192449 0.72 0.53417
Target:  5'- gAGgGGC-AUGGCGGCGGCGccgguuuccagGACGGCg -3'
miRNA:   3'- -UCgCCGuUGUCGUCGCCGCa----------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 67126 0.72 0.53417
Target:  5'- cAGCaGCAACAGCAGCGGgcCGcacagGACGGg -3'
miRNA:   3'- -UCGcCGUUGUCGUCGCC--GCa----CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 16976 0.72 0.541818
Target:  5'- cAGCcGCAGCAGCAGCcgcagggacagcaGGCGcccgcggUGGCGGCg -3'
miRNA:   3'- -UCGcCGUUGUCGUCG-------------CCGC-------ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 17050 0.72 0.543736
Target:  5'- cGGCGGUAACGGCGcCGacaGCGagGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUcGC---CGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 188234 0.72 0.544696
Target:  5'- aAGCGGUcGCAGCAGCGGUugagccagccgcacuUGAUGAUg -3'
miRNA:   3'- -UCGCCGuUGUCGUCGCCGc--------------ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 190936 0.72 0.553358
Target:  5'- uAGCgGGCGACGGUAGgGGa--GACGACg -3'
miRNA:   3'- -UCG-CCGUUGUCGUCgCCgcaCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.