miRNA display CGI


Results 81 - 100 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 147403 0.67 0.834853
Target:  5'- uGGCGGaucGC-GUGGCGGUGagGACGACc -3'
miRNA:   3'- -UCGCCgu-UGuCGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 67861 0.67 0.834853
Target:  5'- -aCGGCAGCGGUuGgGGCGgaacgggaggaGACGACu -3'
miRNA:   3'- ucGCCGUUGUCGuCgCCGCa----------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 179103 0.67 0.834853
Target:  5'- uAGCGaCGACAGCAGCGuaGgUGcAUGACc -3'
miRNA:   3'- -UCGCcGUUGUCGUCGCcgC-AC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 197451 0.67 0.83004
Target:  5'- aGGCGGCGccagcgcaugcucugGCGGauguucacgcGCGGCGggccgGACGGCg -3'
miRNA:   3'- -UCGCCGU---------------UGUCgu--------CGCCGCa----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 50742 0.67 0.826798
Target:  5'- cGuCGGC-GCAGCAGCGGgccagaacguaCGUGAaGACc -3'
miRNA:   3'- uC-GCCGuUGUCGUCGCC-----------GCACUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 170311 0.67 0.826798
Target:  5'- aGGCGGUcacguCGGUguuuaAGCGGCugGUGAUGACc -3'
miRNA:   3'- -UCGCCGuu---GUCG-----UCGCCG--CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 41997 0.67 0.826798
Target:  5'- aGGUcGCAGCAGCAacaCGGCG-GcACGACa -3'
miRNA:   3'- -UCGcCGUUGUCGUc--GCCGCaC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 57276 0.67 0.826798
Target:  5'- aAGCGaccCAGCAGCAGguCGGUGcgcGGCGACu -3'
miRNA:   3'- -UCGCc--GUUGUCGUC--GCCGCa--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 7446 0.67 0.826798
Target:  5'- cGCGGCGcACAGCAccacGCGGgaCGUG-CGAa -3'
miRNA:   3'- uCGCCGU-UGUCGU----CGCC--GCACuGCUg -5'
14197 3' -58.5 NC_003521.1 + 79633 0.67 0.824349
Target:  5'- cGCGGCGccucggcgucgucuGCugcuGCAGCGGCGacuguUGcgaACGACg -3'
miRNA:   3'- uCGCCGU--------------UGu---CGUCGCCGC-----AC---UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 50489 0.67 0.818579
Target:  5'- cGCGuGCcACAGCgugucGGCGGCG-GugGAg -3'
miRNA:   3'- uCGC-CGuUGUCG-----UCGCCGCaCugCUg -5'
14197 3' -58.5 NC_003521.1 + 149833 0.67 0.818579
Target:  5'- cAGCuGCAACAGCAGCaucGGCGUu-CGcCg -3'
miRNA:   3'- -UCGcCGUUGUCGUCG---CCGCAcuGCuG- -5'
14197 3' -58.5 NC_003521.1 + 3197 0.67 0.818579
Target:  5'- aAG-GGCAACAGCaacccgAGCGGUGUGuGCGu- -3'
miRNA:   3'- -UCgCCGUUGUCG------UCGCCGCAC-UGCug -5'
14197 3' -58.5 NC_003521.1 + 128980 0.67 0.818579
Target:  5'- cGGCGGCGcuuugcGCAGCAGCGucugcaagaaGC-UGugGAUc -3'
miRNA:   3'- -UCGCCGU------UGUCGUCGC----------CGcACugCUG- -5'
14197 3' -58.5 NC_003521.1 + 108546 0.67 0.818579
Target:  5'- uGGCGGCAcACGGUcaagaGGuUGGCGUuGCGGCc -3'
miRNA:   3'- -UCGCCGU-UGUCG-----UC-GCCGCAcUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 119134 0.67 0.818579
Target:  5'- cGCGGCAGCAGaacCAGUGGaagGAgccCGACg -3'
miRNA:   3'- uCGCCGUUGUC---GUCGCCgcaCU---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 148635 0.67 0.818579
Target:  5'- gGGCGGCGaaaaACGGCcccgAGCucGGCGggGAUGGCc -3'
miRNA:   3'- -UCGCCGU----UGUCG----UCG--CCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 215658 0.67 0.818579
Target:  5'- cGCGGCGGgAGCAGCGaaaGCGcGACc-- -3'
miRNA:   3'- uCGCCGUUgUCGUCGC---CGCaCUGcug -5'
14197 3' -58.5 NC_003521.1 + 58736 0.68 0.810202
Target:  5'- aGGCGGCGguGCAGCAGCcacuGCG-GGCuGAg -3'
miRNA:   3'- -UCGCCGU--UGUCGUCGc---CGCaCUG-CUg -5'
14197 3' -58.5 NC_003521.1 + 43594 0.68 0.810202
Target:  5'- gGGCGGCGACgAGgAcGaCGaGCGcGACGACa -3'
miRNA:   3'- -UCGCCGUUG-UCgU-C-GC-CGCaCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.