miRNA display CGI


Results 61 - 80 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 43594 0.68 0.810202
Target:  5'- gGGCGGCGACgAGgAcGaCGaGCGcGACGACa -3'
miRNA:   3'- -UCGCCGUUG-UCgU-C-GC-CGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 44373 0.68 0.810202
Target:  5'- cAGCGGagguucgcGCGGCAGcCGGCcgacccgGGCGACa -3'
miRNA:   3'- -UCGCCgu------UGUCGUC-GCCGca-----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 44686 0.67 0.857966
Target:  5'- -aCGGCAGCGcCAGCaGCG-GACGAa -3'
miRNA:   3'- ucGCCGUUGUcGUCGcCGCaCUGCUg -5'
14197 3' -58.5 NC_003521.1 + 44906 0.66 0.892636
Target:  5'- cAGaCGGC----GCGGCGGCGagGACGAa -3'
miRNA:   3'- -UC-GCCGuuguCGUCGCCGCa-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 45537 0.67 0.857966
Target:  5'- gAGCgGGCGccccguCAGCGGCGGCGaaUGGUGAg -3'
miRNA:   3'- -UCG-CCGUu-----GUCGUCGCCGC--ACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 45770 0.68 0.775274
Target:  5'- cGCGuCAGgaAGCGGCGGaCGgGACGACa -3'
miRNA:   3'- uCGCcGUUg-UCGUCGCC-GCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 46270 0.68 0.810202
Target:  5'- uGGCGGUAGC-GCAGaGGUGcaUGACGGa -3'
miRNA:   3'- -UCGCCGUUGuCGUCgCCGC--ACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 46630 0.68 0.801676
Target:  5'- cAGCca-GGCGGUAGaCGGCGUcGGCGGCg -3'
miRNA:   3'- -UCGccgUUGUCGUC-GCCGCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 46761 0.67 0.842737
Target:  5'- uGGUGGUAGCAGCugauacGgGGCacgGUGugGAUc -3'
miRNA:   3'- -UCGCCGUUGUCGu-----CgCCG---CACugCUG- -5'
14197 3' -58.5 NC_003521.1 + 47631 0.69 0.757066
Target:  5'- aGGCGGCcgUGaCGGCGGCucUGGCGGCa -3'
miRNA:   3'- -UCGCCGuuGUcGUCGCCGc-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 48629 0.72 0.563029
Target:  5'- cGCGGaUAGCAGCgcgAGCaGCGUGAUGAa -3'
miRNA:   3'- uCGCC-GUUGUCG---UCGcCGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 49161 0.66 0.872437
Target:  5'- cGCGGCuGCuGCuGgGGCugauccGUGACGAUu -3'
miRNA:   3'- uCGCCGuUGuCGuCgCCG------CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 49882 0.7 0.671009
Target:  5'- uGGCGGUcgUGGC-GUGcGUGUGGCGACg -3'
miRNA:   3'- -UCGCCGuuGUCGuCGC-CGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 50489 0.67 0.818579
Target:  5'- cGCGuGCcACAGCgugucGGCGGCG-GugGAg -3'
miRNA:   3'- uCGC-CGuUGUCG-----UCGCCGCaCugCUg -5'
14197 3' -58.5 NC_003521.1 + 50742 0.67 0.826798
Target:  5'- cGuCGGC-GCAGCAGCGGgccagaacguaCGUGAaGACc -3'
miRNA:   3'- uC-GCCGuUGUCGUCGCC-----------GCACUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 50836 0.72 0.563029
Target:  5'- gAGCGGUGACGGCGGCuuuuugagaaGGUG-GACGGg -3'
miRNA:   3'- -UCGCCGUUGUCGUCG----------CCGCaCUGCUg -5'
14197 3' -58.5 NC_003521.1 + 50888 0.67 0.853474
Target:  5'- cGGCGGCccGCAcgaugaugauaaaucGCGGUGGCGgagGugGAg -3'
miRNA:   3'- -UCGCCGu-UGU---------------CGUCGCCGCa--CugCUg -5'
14197 3' -58.5 NC_003521.1 + 52037 0.75 0.399322
Target:  5'- uGUGGCGgggacccagacgaGCAGCAGCGGCa-GAUGACg -3'
miRNA:   3'- uCGCCGU-------------UGUCGUCGCCGcaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 52233 0.69 0.742201
Target:  5'- gGGCGGCGggcuacaguuggGCAGCGGCaGGCGguUGuuguugugauccggaGCGGCg -3'
miRNA:   3'- -UCGCCGU------------UGUCGUCG-CCGC--AC---------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 52669 0.77 0.296145
Target:  5'- gAGCGGCAGCAGCGGCaccggcaGCGUcGGCGGu -3'
miRNA:   3'- -UCGCCGUUGUCGUCGc------CGCA-CUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.