miRNA display CGI


Results 81 - 100 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 53352 0.66 0.879376
Target:  5'- cGcCGGC-GCGGCGGCGGaggGGcCGACa -3'
miRNA:   3'- uC-GCCGuUGUCGUCGCCgcaCU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 53398 0.68 0.801676
Target:  5'- cGCGGCgAGCAGgGGaUGGCGcGuCGGCa -3'
miRNA:   3'- uCGCCG-UUGUCgUC-GCCGCaCuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 55728 0.69 0.729006
Target:  5'- cGGCGcGCAGCGccuccCAGCGcGCG-GGCGGCa -3'
miRNA:   3'- -UCGC-CGUUGUc----GUCGC-CGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 55921 0.73 0.505852
Target:  5'- cGGCGGCAACGGgggugcCAGCGGgGUaugaggccucuGugGACg -3'
miRNA:   3'- -UCGCCGUUGUC------GUCGCCgCA-----------CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 57061 0.69 0.709897
Target:  5'- cGCaGCAGUAGCAGCGGC--GACGAg -3'
miRNA:   3'- uCGcCGUUGUCGUCGCCGcaCUGCUg -5'
14197 3' -58.5 NC_003521.1 + 57276 0.67 0.826798
Target:  5'- aAGCGaccCAGCAGCAGguCGGUGcgcGGCGACu -3'
miRNA:   3'- -UCGCc--GUUGUCGUC--GCCGCa--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 58406 0.7 0.700247
Target:  5'- cGCGGCcGCGugauGCGGCGGU-UGACGAa -3'
miRNA:   3'- uCGCCGuUGU----CGUCGCCGcACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 58736 0.68 0.810202
Target:  5'- aGGCGGCGguGCAGCAGCcacuGCG-GGCuGAg -3'
miRNA:   3'- -UCGCCGU--UGUCGUCGc---CGCaCUG-CUg -5'
14197 3' -58.5 NC_003521.1 + 58819 0.74 0.46018
Target:  5'- gAGCaGGCAGCGcGUGGCGGCcGUGACGu- -3'
miRNA:   3'- -UCG-CCGUUGU-CGUCGCCG-CACUGCug -5'
14197 3' -58.5 NC_003521.1 + 59610 0.77 0.316537
Target:  5'- uAGUGGCGGCGGCcccGGCGGCGaccGCGGCu -3'
miRNA:   3'- -UCGCCGUUGUCG---UCGCCGCac-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 60177 0.68 0.810202
Target:  5'- -cCGGUAGCgAGCcGCGGCGUGAgaACg -3'
miRNA:   3'- ucGCCGUUG-UCGuCGCCGCACUgcUG- -5'
14197 3' -58.5 NC_003521.1 + 63229 0.68 0.783317
Target:  5'- cAGCGG-AACGGCcggaaccGGCGGCGccgccaccuuUGACGAg -3'
miRNA:   3'- -UCGCCgUUGUCG-------UCGCCGC----------ACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 65714 0.7 0.700247
Target:  5'- cAGCGGC-GCcGCGGCGGCccUGGcCGGCa -3'
miRNA:   3'- -UCGCCGuUGuCGUCGCCGc-ACU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 66373 0.68 0.775274
Target:  5'- cGGCGGCgAGCAGCGacaccagcGCGuGCGUGAa-ACg -3'
miRNA:   3'- -UCGCCG-UUGUCGU--------CGC-CGCACUgcUG- -5'
14197 3' -58.5 NC_003521.1 + 67126 0.72 0.53417
Target:  5'- cAGCaGCAACAGCAGCGGgcCGcacagGACGGg -3'
miRNA:   3'- -UCGcCGUUGUCGUCGCC--GCa----CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 67861 0.67 0.834853
Target:  5'- -aCGGCAGCGGUuGgGGCGgaacgggaggaGACGACu -3'
miRNA:   3'- ucGCCGUUGUCGuCgCCGCa----------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 68016 0.7 0.661194
Target:  5'- cAGCuGCGugAGCcucaccgccacgGGCGGCGUGguccGCGGCg -3'
miRNA:   3'- -UCGcCGUugUCG------------UCGCCGCAC----UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 68178 0.68 0.775274
Target:  5'- cAGCGcGCAGaccaAGCGGgGGCGcgUGAgGACc -3'
miRNA:   3'- -UCGC-CGUUg---UCGUCgCCGC--ACUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 68423 0.67 0.857966
Target:  5'- cGCGGCGACGGCuccgccGGCGccccucaaccGCGUGcCGGu -3'
miRNA:   3'- uCGCCGUUGUCG------UCGC----------CGCACuGCUg -5'
14197 3' -58.5 NC_003521.1 + 69731 0.79 0.25257
Target:  5'- cGCGGUAACGGCgGGCGGgGaGGCGGCg -3'
miRNA:   3'- uCGCCGUUGUCG-UCGCCgCaCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.