miRNA display CGI


Results 101 - 120 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 69782 0.66 0.879376
Target:  5'- -aCGGCGACgaGGgAGCGGCcGUcgaGAUGACg -3'
miRNA:   3'- ucGCCGUUG--UCgUCGCCG-CA---CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 70303 0.66 0.879376
Target:  5'- aAGCGGUgcaggucgccCAGCAGCgaGGCgGUGACGcCg -3'
miRNA:   3'- -UCGCCGuu--------GUCGUCG--CCG-CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 70926 0.67 0.850443
Target:  5'- cAGCGccaGCAggguccACAGCAGCGaGCGgaGCGGCu -3'
miRNA:   3'- -UCGC---CGU------UGUCGUCGC-CGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 71859 0.81 0.190272
Target:  5'- cGuCGGCGACAGCAGCGGgaGcGACGGCg -3'
miRNA:   3'- uC-GCCGUUGUCGUCGCCg-CaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 72853 0.7 0.651357
Target:  5'- gGGCGGCGACGGUAGgcaCGGCG-GuCGuCg -3'
miRNA:   3'- -UCGCCGUUGUCGUC---GCCGCaCuGCuG- -5'
14197 3' -58.5 NC_003521.1 + 73142 0.79 0.25257
Target:  5'- cGGgGGCAGCGGCGGCGGCGccgccuCGGCc -3'
miRNA:   3'- -UCgCCGUUGUCGUCGCCGCacu---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 73241 1.1 0.002215
Target:  5'- gAGCGGCAACAGCAGCGGCGUGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 74019 0.78 0.270565
Target:  5'- cGUcGCAGCAGCAGCGGCG--GCGGCa -3'
miRNA:   3'- uCGcCGUUGUCGUCGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 74188 0.67 0.857966
Target:  5'- cGCGGCGccCGGCGcGCGGCccGACGcCg -3'
miRNA:   3'- uCGCCGUu-GUCGU-CGCCGcaCUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 74218 0.68 0.810202
Target:  5'- cAGCaGCAGCAGgccguCGGCGcCGUGACGGu -3'
miRNA:   3'- -UCGcCGUUGUC-----GUCGCcGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 74362 0.71 0.611941
Target:  5'- cGCGGCuACGGCcaguGCGGC--GACGGCu -3'
miRNA:   3'- uCGCCGuUGUCGu---CGCCGcaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 74573 0.82 0.164486
Target:  5'- gGGCGGCGACggAGCGGCGGCGcGGCGuCc -3'
miRNA:   3'- -UCGCCGUUG--UCGUCGCCGCaCUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 74691 0.72 0.563029
Target:  5'- aAGCaGCAGCGaCGGCGGCGccGCGGCa -3'
miRNA:   3'- -UCGcCGUUGUcGUCGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 74792 0.89 0.058135
Target:  5'- cGGCGGCAGCGGUAGCGGCGagacgcggacgGACGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCa----------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 74897 0.67 0.842737
Target:  5'- uGCGcGaGACGGUGGCGGCG-GugGAg -3'
miRNA:   3'- uCGC-CgUUGUCGUCGCCGCaCugCUg -5'
14197 3' -58.5 NC_003521.1 + 75547 0.7 0.661194
Target:  5'- cAGCGGCGcCGGCGGCGGCu--ACGcCa -3'
miRNA:   3'- -UCGCCGUuGUCGUCGCCGcacUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 76222 0.85 0.099807
Target:  5'- gAGUGGCGGCGGcCGGUGGCGUGGCGGu -3'
miRNA:   3'- -UCGCCGUUGUC-GUCGCCGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 76324 0.83 0.145442
Target:  5'- uGGCGGCGACAGCuGCGGaggcgacgGUGACGGCn -3'
miRNA:   3'- -UCGCCGUUGUCGuCGCCg-------CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 76358 0.92 0.032669
Target:  5'- uGCGGCGGCGGCAGCGGCGaccgUGACGGCc -3'
miRNA:   3'- uCGCCGUUGUCGUCGCCGC----ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 76394 0.72 0.553358
Target:  5'- cGCGGUGGCgcugcuagcaccAGCGGCGGUGUGguggugcugGCGACc -3'
miRNA:   3'- uCGCCGUUG------------UCGUCGCCGCAC---------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.