miRNA display CGI


Results 121 - 140 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 76477 0.69 0.71853
Target:  5'- uGGCGGUAGgAGCuGuCGccgggacGCGUGGCGGCu -3'
miRNA:   3'- -UCGCCGUUgUCGuC-GC-------CGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 76711 0.71 0.611941
Target:  5'- cGGUGGCAcCGGCGGCGGCaGUaaaGACu -3'
miRNA:   3'- -UCGCCGUuGUCGUCGCCG-CAcugCUG- -5'
14197 3' -58.5 NC_003521.1 + 77017 0.66 0.872437
Target:  5'- cAGgGGCAGCAuGCgguugaggccGGCGGUgGUGGCGcCg -3'
miRNA:   3'- -UCgCCGUUGU-CG----------UCGCCG-CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 77221 0.67 0.857966
Target:  5'- gAGCGGagAGCAGCcuaCGGgG-GACGACa -3'
miRNA:   3'- -UCGCCg-UUGUCGuc-GCCgCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 77394 0.74 0.469144
Target:  5'- cGGUGGCAcccugguaGGCAGCGGCagccGACGACg -3'
miRNA:   3'- -UCGCCGUug------UCGUCGCCGca--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 77697 0.74 0.433848
Target:  5'- uGGCGaaGACAGCcguGGCGGCGUuguuGGCGACg -3'
miRNA:   3'- -UCGCcgUUGUCG---UCGCCGCA----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 77715 0.69 0.719486
Target:  5'- aGGCGGCggUGGUcGUGGCGcUGGCGcCc -3'
miRNA:   3'- -UCGCCGuuGUCGuCGCCGC-ACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 78138 0.66 0.865299
Target:  5'- gGGC-GCGuUAGCGGCGGCGgccGCGAa -3'
miRNA:   3'- -UCGcCGUuGUCGUCGCCGCac-UGCUg -5'
14197 3' -58.5 NC_003521.1 + 79633 0.67 0.824349
Target:  5'- cGCGGCGccucggcgucgucuGCugcuGCAGCGGCGacuguUGcgaACGACg -3'
miRNA:   3'- uCGCCGU--------------UGu---CGUCGCCGC-----AC---UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 83590 0.68 0.775274
Target:  5'- -uUGGUcgGACcucGCGGCGGCGUauGACGGCg -3'
miRNA:   3'- ucGCCG--UUGu--CGUCGCCGCA--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 83889 0.66 0.872437
Target:  5'- gAGCGcGCGACAaauGUA-CGGgGUGAUGGCc -3'
miRNA:   3'- -UCGC-CGUUGU---CGUcGCCgCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 84409 0.68 0.774374
Target:  5'- cGGCGGUuguagguGAcCAGCGGCaGgGUGGCGAa -3'
miRNA:   3'- -UCGCCG-------UU-GUCGUCGcCgCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 84759 0.66 0.879376
Target:  5'- --gGGC-GCGGCGGCGGCGacguUGuuGGCa -3'
miRNA:   3'- ucgCCGuUGUCGUCGCCGC----ACugCUG- -5'
14197 3' -58.5 NC_003521.1 + 85110 0.88 0.067925
Target:  5'- -uCGGCGGCGGCAGCGGCG-GGCGGCa -3'
miRNA:   3'- ucGCCGUUGUCGUCGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 86217 0.69 0.747804
Target:  5'- gGGCGGCGGCAcGcCGGCGGCcuUGAgcuccuUGACg -3'
miRNA:   3'- -UCGCCGUUGU-C-GUCGCCGc-ACU------GCUG- -5'
14197 3' -58.5 NC_003521.1 + 86423 0.7 0.660211
Target:  5'- cGCGuGCccgccuccugauuGGCGGCAGCGGCGaccGAgGACg -3'
miRNA:   3'- uCGC-CG-------------UUGUCGUCGCCGCa--CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 86697 0.69 0.729006
Target:  5'- uGGCGG--GCcGCGGCGGCGacGACGAg -3'
miRNA:   3'- -UCGCCguUGuCGUCGCCGCa-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 87065 0.66 0.892636
Target:  5'- cAGCGGguGgaaGGCGGCGGCGUaGgGGu -3'
miRNA:   3'- -UCGCCguUg--UCGUCGCCGCAcUgCUg -5'
14197 3' -58.5 NC_003521.1 + 87379 0.66 0.872437
Target:  5'- aGGUGGagGACgaGGCGGCGGagGUGACGcCg -3'
miRNA:   3'- -UCGCCg-UUG--UCGUCGCCg-CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 88068 0.68 0.810202
Target:  5'- cGCGGUGGuCGGCGGCGccCGUGACcACg -3'
miRNA:   3'- uCGCCGUU-GUCGUCGCc-GCACUGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.