miRNA display CGI


Results 61 - 80 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 193179 0.68 0.766225
Target:  5'- gAGcCGGCGGgAGCGGCGgaGCGUGAaGAa -3'
miRNA:   3'- -UC-GCCGUUgUCGUCGC--CGCACUgCUg -5'
14197 3' -58.5 NC_003521.1 + 192814 0.73 0.505852
Target:  5'- cGCuGGCAGCAGCcgcagaagcccGGCGGCGcguccGugGACg -3'
miRNA:   3'- uCG-CCGUUGUCG-----------UCGCCGCa----CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 192449 0.72 0.53417
Target:  5'- gAGgGGC-AUGGCGGCGGCGccgguuuccagGACGGCg -3'
miRNA:   3'- -UCgCCGuUGUCGUCGCCGCa----------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 192298 0.8 0.214409
Target:  5'- cGuCGGCAccguccGCGGUAGCGGCGUcGGCGGCa -3'
miRNA:   3'- uC-GCCGU------UGUCGUCGCCGCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 192043 0.69 0.729006
Target:  5'- cGGCGuGC-GCGGCAgacGCGGCGUccGCGGCg -3'
miRNA:   3'- -UCGC-CGuUGUCGU---CGCCGCAc-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 191075 0.76 0.33797
Target:  5'- cGCGGCGACcgugguGGCGGCGGCG-GGCuGCg -3'
miRNA:   3'- uCGCCGUUG------UCGUCGCCGCaCUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 190990 0.7 0.680795
Target:  5'- gAGCGGCAGCAgGC-GCaGGUGgacGugGGCa -3'
miRNA:   3'- -UCGCCGUUGU-CGuCG-CCGCa--CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 190936 0.72 0.553358
Target:  5'- uAGCgGGCGACGGUAGgGGa--GACGACg -3'
miRNA:   3'- -UCG-CCGUUGUCGUCgCCgcaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 190567 0.7 0.671009
Target:  5'- uGCaGCGGCAGUA-CGGCGUGAuCGAg -3'
miRNA:   3'- uCGcCGUUGUCGUcGCCGCACU-GCUg -5'
14197 3' -58.5 NC_003521.1 + 190540 0.88 0.069704
Target:  5'- uGCGGCGGCAGCAGCGGCG-GAccCGGCu -3'
miRNA:   3'- uCGCCGUUGUCGUCGCCGCaCU--GCUG- -5'
14197 3' -58.5 NC_003521.1 + 188234 0.72 0.544696
Target:  5'- aAGCGGUcGCAGCAGCGGUugagccagccgcacuUGAUGAUg -3'
miRNA:   3'- -UCGCCGuUGUCGUCGCCGc--------------ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 187891 0.7 0.661194
Target:  5'- gGGCGGCAcgGGCGGCGGgGgcagGuCGAUc -3'
miRNA:   3'- -UCGCCGUugUCGUCGCCgCa---CuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 187325 0.71 0.621791
Target:  5'- uGCGacGCcGCAGCAGCGGCcucgacGUGAUGAa -3'
miRNA:   3'- uCGC--CGuUGUCGUCGCCG------CACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 187158 0.74 0.442529
Target:  5'- cGGCGGCGGCAGgAGCGGaagcaaCGUgcggaGACGGCc -3'
miRNA:   3'- -UCGCCGUUGUCgUCGCC------GCA-----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 186930 0.71 0.592289
Target:  5'- cGGUGGCGGgGGCGGCGGCGa-ACG-Ca -3'
miRNA:   3'- -UCGCCGUUgUCGUCGCCGCacUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 186849 0.83 0.128432
Target:  5'- uGGCGGCc-CAGCGGCGGCGUGcagcACGGCu -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCGCAC----UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 186765 0.81 0.181304
Target:  5'- cGGCGGCAucgGCggaGGCGGCGGUGgUGGCGGCg -3'
miRNA:   3'- -UCGCCGU---UG---UCGUCGCCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 186693 0.68 0.766225
Target:  5'- cGGCGGUAGCAGCAuGCa-CGacGACGGCu -3'
miRNA:   3'- -UCGCCGUUGUCGU-CGccGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 186639 0.82 0.160506
Target:  5'- uGGCGGCAagucgacgucgcGCGGCGGUGGCGgaGGCGGCg -3'
miRNA:   3'- -UCGCCGU------------UGUCGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 183783 0.67 0.857966
Target:  5'- gGGCaGGaCGAguGCcugGGCGGCGUGuucauccgcgugGCGGCg -3'
miRNA:   3'- -UCG-CC-GUUguCG---UCGCCGCAC------------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.