miRNA display CGI


Results 81 - 100 of 430 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 182841 0.71 0.602105
Target:  5'- cGGCGGCGcugacaACAGCAGCgaGGaCGaUGAUGAUa -3'
miRNA:   3'- -UCGCCGU------UGUCGUCG--CC-GC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 181466 0.7 0.676885
Target:  5'- cAGCGGCuggcgcgccgccuGCAGC-GUGGCGUGGCu-- -3'
miRNA:   3'- -UCGCCGu------------UGUCGuCGCCGCACUGcug -5'
14197 3' -58.5 NC_003521.1 + 180086 0.71 0.610956
Target:  5'- uGCGcGUcaccccguccaggGAgGGCAGCGGCGUGguGCGACc -3'
miRNA:   3'- uCGC-CG-------------UUgUCGUCGCCGCAC--UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 179564 0.7 0.671009
Target:  5'- aAGCaGUAACAGaGGCGcGUGUGGCGAa -3'
miRNA:   3'- -UCGcCGUUGUCgUCGC-CGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 179103 0.67 0.834853
Target:  5'- uAGCGaCGACAGCAGCGuaGgUGcAUGACc -3'
miRNA:   3'- -UCGCcGUUGUCGUCGCcgC-AC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 176275 0.68 0.810202
Target:  5'- uGGUGuugaGCAGCAGCAGacgGGCGUcGGCGuCg -3'
miRNA:   3'- -UCGC----CGUUGUCGUCg--CCGCA-CUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 175038 0.69 0.729006
Target:  5'- gGGcCGGCcgaaguugucCGGCGGCGGUGUGauGCGGCc -3'
miRNA:   3'- -UC-GCCGuu--------GUCGUCGCCGCAC--UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 173454 0.68 0.810202
Target:  5'- uGGgGGUGACAcCGGCGGUaGUGGCGuCg -3'
miRNA:   3'- -UCgCCGUUGUcGUCGCCG-CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 172315 0.67 0.857966
Target:  5'- cGGUGGCGccaggccggucGCGGCGGacgGGUGaggGGCGGCg -3'
miRNA:   3'- -UCGCCGU-----------UGUCGUCg--CCGCa--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 172072 0.74 0.442529
Target:  5'- uGCGuCAGgaccguCAGCGGCGGCGUGAUGAa -3'
miRNA:   3'- uCGCcGUU------GUCGUCGCCGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 171679 0.73 0.524664
Target:  5'- cGGCGGCAugAcgAGCaacaaGCGUGACGACa -3'
miRNA:   3'- -UCGCCGUugUcgUCGc----CGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 171602 0.68 0.766225
Target:  5'- cAGCGGaacccgAGCGGCGGCGGgaGUGccgcCGACg -3'
miRNA:   3'- -UCGCCg-----UUGUCGUCGCCg-CACu---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 170348 0.68 0.775274
Target:  5'- cGUGGCGGCAGCGGUGGUacucggGAUcACg -3'
miRNA:   3'- uCGCCGUUGUCGUCGCCGca----CUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 170311 0.67 0.826798
Target:  5'- aGGCGGUcacguCGGUguuuaAGCGGCugGUGAUGACc -3'
miRNA:   3'- -UCGCCGuu---GUCG-----UCGCCG--CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 170209 0.66 0.865299
Target:  5'- uAGUGGCAcgaGgGGUcgucgacuuAGCGGUGgUGAUGACa -3'
miRNA:   3'- -UCGCCGU---UgUCG---------UCGCCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 169716 0.66 0.879376
Target:  5'- cGUGGCGuuCAGguGCGuccCGUaGACGGCg -3'
miRNA:   3'- uCGCCGUu-GUCguCGCc--GCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 169677 0.71 0.631649
Target:  5'- aGGaGGCAACAGCAGaggaggaGGCGgcGACGAg -3'
miRNA:   3'- -UCgCCGUUGUCGUCg------CCGCa-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 169441 0.71 0.641506
Target:  5'- cGCGGaCGACGGCGuCGGCG--GCGGCg -3'
miRNA:   3'- uCGCC-GUUGUCGUcGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 169276 0.72 0.553358
Target:  5'- aGGCGGCGucgucuuCGGCGGCGGgcucgGUGACGuCg -3'
miRNA:   3'- -UCGCCGUu------GUCGUCGCCg----CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 168580 0.71 0.641506
Target:  5'- uGGCGGCugaccCAGCGGCGGCaugGACa-- -3'
miRNA:   3'- -UCGCCGuu---GUCGUCGCCGca-CUGcug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.