miRNA display CGI


Results 101 - 120 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 168537 0.83 0.145442
Target:  5'- uGGCGGCcagcGCGGCGGCGGCGcUGGCGGg -3'
miRNA:   3'- -UCGCCGu---UGUCGUCGCCGC-ACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 168496 0.72 0.582501
Target:  5'- gGGCGGCGagACGGaGGCGGag-GACGGCg -3'
miRNA:   3'- -UCGCCGU--UGUCgUCGCCgcaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 168427 0.78 0.264454
Target:  5'- gGGCGGCAgggccGCGGCGGCgGGCGUGAaGAg -3'
miRNA:   3'- -UCGCCGU-----UGUCGUCG-CCGCACUgCUg -5'
14197 3' -58.5 NC_003521.1 + 168361 0.73 0.505852
Target:  5'- gAGCGGCGcguaGCGGCAGuCGGCG-GGCa-- -3'
miRNA:   3'- -UCGCCGU----UGUCGUC-GCCGCaCUGcug -5'
14197 3' -58.5 NC_003521.1 + 168147 0.73 0.505852
Target:  5'- aGGUGGCcACGGCcuGCGGCGUauGCGGCa -3'
miRNA:   3'- -UCGCCGuUGUCGu-CGCCGCAc-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 167713 0.77 0.302827
Target:  5'- aGGCGGCggUAGCAGCGGUaGUGguaGACc -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCG-CACug-CUG- -5'
14197 3' -58.5 NC_003521.1 + 167540 0.68 0.775274
Target:  5'- cAGaCGGCGAUAG-AGCGGaCGUgucgguaauGACGGCg -3'
miRNA:   3'- -UC-GCCGUUGUCgUCGCC-GCA---------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 167422 0.7 0.687623
Target:  5'- aAGUGGCGGC-GCAGCaGGUGgaugaacucggacaUGACGAUg -3'
miRNA:   3'- -UCGCCGUUGuCGUCG-CCGC--------------ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 167035 0.75 0.425267
Target:  5'- -uCGGuCAGCucgGGCAGCGGCGUGGCG-Cu -3'
miRNA:   3'- ucGCC-GUUG---UCGUCGCCGCACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 166766 0.67 0.857966
Target:  5'- cAGCGGCgcGugAGCucgggacaGGCGGgGUcgGACGAUg -3'
miRNA:   3'- -UCGCCG--UugUCG--------UCGCCgCA--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 166657 0.71 0.611941
Target:  5'- cGCGGCGcaGCGGcCAGCGGCaccugggccccGUGGCG-Cg -3'
miRNA:   3'- uCGCCGU--UGUC-GUCGCCG-----------CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 165115 0.68 0.810202
Target:  5'- cAGCGGCGGCuguGguGCGGaCGggGGCugGACc -3'
miRNA:   3'- -UCGCCGUUGu--CguCGCC-GCa-CUG--CUG- -5'
14197 3' -58.5 NC_003521.1 + 164540 0.66 0.892636
Target:  5'- -cCGGacucGCAGCAGCGGCa--GCGACu -3'
miRNA:   3'- ucGCCgu--UGUCGUCGCCGcacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 164214 0.82 0.164486
Target:  5'- gGGCGGCggUGGUAGCGGCGgcugGACGGu -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCGCa---CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 163921 0.72 0.53417
Target:  5'- uGCGGCGGCAGCGGCaacgaaagaGGCGagGAgGAg -3'
miRNA:   3'- uCGCCGUUGUCGUCG---------CCGCa-CUgCUg -5'
14197 3' -58.5 NC_003521.1 + 163749 0.8 0.204453
Target:  5'- cGGCGGCAACAGCGGCGcucaCGgcGGCGGCa -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCc---GCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 163354 0.81 0.175677
Target:  5'- uAGCGGUAGCAGCGGCGGCGgcaGugucacgggcaccaACGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCa--C--------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 163306 0.69 0.747804
Target:  5'- cGaCGGCGuguccACGGuCAGCGGCGcGAgCGGCa -3'
miRNA:   3'- uC-GCCGU-----UGUC-GUCGCCGCaCU-GCUG- -5'
14197 3' -58.5 NC_003521.1 + 163201 0.82 0.149083
Target:  5'- uGGUGGCGGCGGCAGCGGCaGUagcuccGGCGGCc -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCG-CA------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 163168 0.68 0.810202
Target:  5'- uGGUGGCAgcaauaACAGCGGCaGCG-GAC-ACg -3'
miRNA:   3'- -UCGCCGU------UGUCGUCGcCGCaCUGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.