Results 41 - 60 of 430 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 163201 | 0.82 | 0.149083 |
Target: 5'- uGGUGGCGGCGGCAGCGGCaGUagcuccGGCGGCc -3' miRNA: 3'- -UCGCCGUUGUCGUCGCCG-CA------CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 168537 | 0.83 | 0.145442 |
Target: 5'- uGGCGGCcagcGCGGCGGCGGCGcUGGCGGg -3' miRNA: 3'- -UCGCCGu---UGUCGUCGCCGC-ACUGCUg -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 218704 | 0.83 | 0.138404 |
Target: 5'- aGGCGGaggaGACGGCGGCGGCGgcgGGCGAg -3' miRNA: 3'- -UCGCCg---UUGUCGUCGCCGCa--CUGCUg -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 186849 | 0.83 | 0.128432 |
Target: 5'- uGGCGGCc-CAGCGGCGGCGUGcagcACGGCu -3' miRNA: 3'- -UCGCCGuuGUCGUCGCCGCAC----UGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 123614 | 0.86 | 0.087858 |
Target: 5'- cAGgGGCAGCcgccguAGCAGCGGCGUGAUGAUg -3' miRNA: 3'- -UCgCCGUUG------UCGUCGCCGCACUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 163749 | 0.8 | 0.204453 |
Target: 5'- cGGCGGCAACAGCGGCGcucaCGgcGGCGGCa -3' miRNA: 3'- -UCGCCGUUGUCGUCGCc---GCa-CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 207443 | 0.8 | 0.204453 |
Target: 5'- gAGCGGCGGCuGGCGGCGuGUGUGAgUGACg -3' miRNA: 3'- -UCGCCGUUG-UCGUCGC-CGCACU-GCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 31704 | 0.78 | 0.289579 |
Target: 5'- gGGCGGCGGCAGCAuGUGcGCGUGcugggacgccGCGGCc -3' miRNA: 3'- -UCGCCGUUGUCGU-CGC-CGCAC----------UGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 209563 | 0.78 | 0.289579 |
Target: 5'- uGGCGGCGACGGUGGCGGgGguccgggGGCGcACg -3' miRNA: 3'- -UCGCCGUUGUCGUCGCCgCa------CUGC-UG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 128463 | 0.78 | 0.283127 |
Target: 5'- aGGCGGaucacgucCAugGGCAGCGGCGUGA-GGCu -3' miRNA: 3'- -UCGCC--------GUugUCGUCGCCGCACUgCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 102764 | 0.78 | 0.283127 |
Target: 5'- cGCGGUAgaGCGGCAGCGGCugcgcGAUGACg -3' miRNA: 3'- uCGCCGU--UGUCGUCGCCGca---CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 131047 | 0.78 | 0.276789 |
Target: 5'- gGGCGGCGGCGGCGggccucuggacGCGGUGgcGGCGACc -3' miRNA: 3'- -UCGCCGUUGUCGU-----------CGCCGCa-CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 168427 | 0.78 | 0.264454 |
Target: 5'- gGGCGGCAgggccGCGGCGGCgGGCGUGAaGAg -3' miRNA: 3'- -UCGCCGU-----UGUCGUCG-CCGCACUgCUg -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 118927 | 0.78 | 0.264454 |
Target: 5'- cGCGGCGugGGCGGCGGCGUccCGuCa -3' miRNA: 3'- uCGCCGUugUCGUCGCCGCAcuGCuG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 73142 | 0.79 | 0.25257 |
Target: 5'- cGGgGGCAGCGGCGGCGGCGccgccuCGGCc -3' miRNA: 3'- -UCgCCGUUGUCGUCGCCGCacu---GCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 96785 | 0.79 | 0.246794 |
Target: 5'- cGcCGGCAGCAGCGGCGGCGcucggGcACGAUc -3' miRNA: 3'- uC-GCCGUUGUCGUCGCCGCa----C-UGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 135773 | 0.79 | 0.233924 |
Target: 5'- aGGCGGUGGCGGCAGUGGCGcUGcgggaggaggagcaGCGGCg -3' miRNA: 3'- -UCGCCGUUGUCGUCGCCGC-AC--------------UGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 150625 | 0.79 | 0.230121 |
Target: 5'- uGCGGCGGCugcugcgcaGGCGGgGGCGUGcGCGACg -3' miRNA: 3'- uCGCCGUUG---------UCGUCgCCGCAC-UGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 27974 | 0.8 | 0.219542 |
Target: 5'- aGGCGGCGcucacggccACGGCGGCaGCGUGAgCGGCa -3' miRNA: 3'- -UCGCCGU---------UGUCGUCGcCGCACU-GCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 192298 | 0.8 | 0.214409 |
Target: 5'- cGuCGGCAccguccGCGGUAGCGGCGUcGGCGGCa -3' miRNA: 3'- uC-GCCGU------UGUCGUCGCCGCA-CUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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