miRNA display CGI


Results 61 - 80 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 135773 0.79 0.233924
Target:  5'- aGGCGGUGGCGGCAGUGGCGcUGcgggaggaggagcaGCGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGC-AC--------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 96785 0.79 0.246794
Target:  5'- cGcCGGCAGCAGCGGCGGCGcucggGcACGAUc -3'
miRNA:   3'- uC-GCCGUUGUCGUCGCCGCa----C-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 224011 0.77 0.302827
Target:  5'- uGCGGCAGCGGCGGgccCGGCGgucggGGCGGg -3'
miRNA:   3'- uCGCCGUUGUCGUC---GCCGCa----CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 59610 0.77 0.316537
Target:  5'- uAGUGGCGGCGGCcccGGCGGCGaccGCGGCu -3'
miRNA:   3'- -UCGCCGUUGUCG---UCGCCGCac-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 191075 0.76 0.33797
Target:  5'- cGCGGCGACcgugguGGCGGCGGCG-GGCuGCg -3'
miRNA:   3'- uCGCCGUUG------UCGUCGCCGCaCUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 151450 0.76 0.352835
Target:  5'- uGCGGCGACAGguGaCGauaGCGUGuCGACg -3'
miRNA:   3'- uCGCCGUUGUCguC-GC---CGCACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 132427 0.76 0.375987
Target:  5'- uGCGGCGACgccgcuGGUAGCGGUG-GugGGCu -3'
miRNA:   3'- uCGCCGUUG------UCGUCGCCGCaCugCUG- -5'
14197 3' -58.5 NC_003521.1 + 28252 0.75 0.408412
Target:  5'- aAGaCGGCGccgagaggaACAGCGGCGGCGaUGACaGCa -3'
miRNA:   3'- -UC-GCCGU---------UGUCGUCGCCGC-ACUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 145582 0.75 0.416788
Target:  5'- uGCGGCGGCAcgacGCGGCGGcCGUGGCc-- -3'
miRNA:   3'- uCGCCGUUGU----CGUCGCC-GCACUGcug -5'
14197 3' -58.5 NC_003521.1 + 116880 0.75 0.425267
Target:  5'- cAGUGGCGcgGCuGCGGCGGCGcGcCGGCg -3'
miRNA:   3'- -UCGCCGU--UGuCGUCGCCGCaCuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 167713 0.77 0.302827
Target:  5'- aGGCGGCggUAGCAGCGGUaGUGguaGACc -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCG-CACug-CUG- -5'
14197 3' -58.5 NC_003521.1 + 18735 0.78 0.289579
Target:  5'- cGGCGGCGAUcGUGGCGGCgGUGGCGcCg -3'
miRNA:   3'- -UCGCCGUUGuCGUCGCCG-CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 73142 0.79 0.25257
Target:  5'- cGGgGGCAGCGGCGGCGGCGccgccuCGGCc -3'
miRNA:   3'- -UCgCCGUUGUCGUCGCCGCacu---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 118927 0.78 0.264454
Target:  5'- cGCGGCGugGGCGGCGGCGUccCGuCa -3'
miRNA:   3'- uCGCCGUugUCGUCGCCGCAcuGCuG- -5'
14197 3' -58.5 NC_003521.1 + 168427 0.78 0.264454
Target:  5'- gGGCGGCAgggccGCGGCGGCgGGCGUGAaGAg -3'
miRNA:   3'- -UCGCCGU-----UGUCGUCG-CCGCACUgCUg -5'
14197 3' -58.5 NC_003521.1 + 131047 0.78 0.276789
Target:  5'- gGGCGGCGGCGGCGggccucuggacGCGGUGgcGGCGACc -3'
miRNA:   3'- -UCGCCGUUGUCGU-----------CGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 102764 0.78 0.283127
Target:  5'- cGCGGUAgaGCGGCAGCGGCugcgcGAUGACg -3'
miRNA:   3'- uCGCCGU--UGUCGUCGCCGca---CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 128463 0.78 0.283127
Target:  5'- aGGCGGaucacgucCAugGGCAGCGGCGUGA-GGCu -3'
miRNA:   3'- -UCGCC--------GUugUCGUCGCCGCACUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 209563 0.78 0.289579
Target:  5'- uGGCGGCGACGGUGGCGGgGguccgggGGCGcACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCgCa------CUGC-UG- -5'
14197 3' -58.5 NC_003521.1 + 31704 0.78 0.289579
Target:  5'- gGGCGGCGGCAGCAuGUGcGCGUGcugggacgccGCGGCc -3'
miRNA:   3'- -UCGCCGUUGUCGU-CGC-CGCAC----------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.