miRNA display CGI


Results 81 - 100 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 216828 0.74 0.450425
Target:  5'- uGGCGcGCAggaggucGCAGCccGCGGCG-GACGACu -3'
miRNA:   3'- -UCGC-CGU-------UGUCGu-CGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 120926 0.74 0.451307
Target:  5'- uGCGGCugcccGCGGCGGCGGCuccGGCGAg -3'
miRNA:   3'- uCGCCGu----UGUCGUCGCCGca-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 58819 0.74 0.46018
Target:  5'- gAGCaGGCAGCGcGUGGCGGCcGUGACGu- -3'
miRNA:   3'- -UCG-CCGUUGU-CGUCGCCG-CACUGCug -5'
14197 3' -58.5 NC_003521.1 + 77394 0.74 0.469144
Target:  5'- cGGUGGCAcccugguaGGCAGCGGCagccGACGACg -3'
miRNA:   3'- -UCGCCGUug------UCGUCGCCGca--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 192814 0.73 0.505852
Target:  5'- cGCuGGCAGCAGCcgcagaagcccGGCGGCGcguccGugGACg -3'
miRNA:   3'- uCG-CCGUUGUCG-----------UCGCCGCa----CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 168147 0.73 0.505852
Target:  5'- aGGUGGCcACGGCcuGCGGCGUauGCGGCa -3'
miRNA:   3'- -UCGCCGuUGUCGu-CGCCGCAc-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 168361 0.73 0.505852
Target:  5'- gAGCGGCGcguaGCGGCAGuCGGCG-GGCa-- -3'
miRNA:   3'- -UCGCCGU----UGUCGUC-GCCGCaCUGcug -5'
14197 3' -58.5 NC_003521.1 + 116880 0.75 0.425267
Target:  5'- cAGUGGCGcgGCuGCGGCGGCGcGcCGGCg -3'
miRNA:   3'- -UCGCCGU--UGuCGUCGCCGCaCuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 145582 0.75 0.416788
Target:  5'- uGCGGCGGCAcgacGCGGCGGcCGUGGCc-- -3'
miRNA:   3'- uCGCCGUUGU----CGUCGCC-GCACUGcug -5'
14197 3' -58.5 NC_003521.1 + 28252 0.75 0.408412
Target:  5'- aAGaCGGCGccgagaggaACAGCGGCGGCGaUGACaGCa -3'
miRNA:   3'- -UC-GCCGU---------UGUCGUCGCCGC-ACUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 209563 0.78 0.289579
Target:  5'- uGGCGGCGACGGUGGCGGgGguccgggGGCGcACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCgCa------CUGC-UG- -5'
14197 3' -58.5 NC_003521.1 + 31704 0.78 0.289579
Target:  5'- gGGCGGCGGCAGCAuGUGcGCGUGcugggacgccGCGGCc -3'
miRNA:   3'- -UCGCCGUUGUCGU-CGC-CGCAC----------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 18735 0.78 0.289579
Target:  5'- cGGCGGCGAUcGUGGCGGCgGUGGCGcCg -3'
miRNA:   3'- -UCGCCGUUGuCGUCGCCG-CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 167713 0.77 0.302827
Target:  5'- aGGCGGCggUAGCAGCGGUaGUGguaGACc -3'
miRNA:   3'- -UCGCCGuuGUCGUCGCCG-CACug-CUG- -5'
14197 3' -58.5 NC_003521.1 + 224011 0.77 0.302827
Target:  5'- uGCGGCAGCGGCGGgccCGGCGgucggGGCGGg -3'
miRNA:   3'- uCGCCGUUGUCGUC---GCCGCa----CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 59610 0.77 0.316537
Target:  5'- uAGUGGCGGCGGCcccGGCGGCGaccGCGGCu -3'
miRNA:   3'- -UCGCCGUUGUCG---UCGCCGCac-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 191075 0.76 0.33797
Target:  5'- cGCGGCGACcgugguGGCGGCGGCG-GGCuGCg -3'
miRNA:   3'- uCGCCGUUG------UCGUCGCCGCaCUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 151450 0.76 0.352835
Target:  5'- uGCGGCGACAGguGaCGauaGCGUGuCGACg -3'
miRNA:   3'- uCGCCGUUGUCguC-GC---CGCACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 132427 0.76 0.375987
Target:  5'- uGCGGCGACgccgcuGGUAGCGGUG-GugGGCu -3'
miRNA:   3'- uCGCCGUUG------UCGUCGCCGCaCugCUG- -5'
14197 3' -58.5 NC_003521.1 + 203716 0.73 0.515223
Target:  5'- uAGCGaCGGCAGCAGCaGCcggGGCGACa -3'
miRNA:   3'- -UCGCcGUUGUCGUCGcCGca-CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.