Results 101 - 120 of 430 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14197 | 3' | -58.5 | NC_003521.1 | + | 218428 | 0.72 | 0.53417 |
Target: 5'- uGGCcaGCGACAGCGGCGGCaccacgGAgGACa -3' miRNA: 3'- -UCGc-CGUUGUCGUCGCCGca----CUgCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 188234 | 0.72 | 0.544696 |
Target: 5'- aAGCGGUcGCAGCAGCGGUugagccagccgcacuUGAUGAUg -3' miRNA: 3'- -UCGCCGuUGUCGUCGCCGc--------------ACUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 190936 | 0.72 | 0.553358 |
Target: 5'- uAGCgGGCGACGGUAGgGGa--GACGACg -3' miRNA: 3'- -UCG-CCGUUGUCGUCgCCgcaCUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 101480 | 0.72 | 0.560123 |
Target: 5'- uAGUGGCGcgugaggugcucgaGCAGCGGCGGCcaGACG-Cg -3' miRNA: 3'- -UCGCCGU--------------UGUCGUCGCCGcaCUGCuG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 30974 | 0.72 | 0.563029 |
Target: 5'- cGGCacGCAGCAGCAGCuGCGgaucgggauggGGCGACg -3' miRNA: 3'- -UCGc-CGUUGUCGUCGcCGCa----------CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 77394 | 0.74 | 0.469144 |
Target: 5'- cGGUGGCAcccugguaGGCAGCGGCagccGACGACg -3' miRNA: 3'- -UCGCCGUug------UCGUCGCCGca--CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 58819 | 0.74 | 0.46018 |
Target: 5'- gAGCaGGCAGCGcGUGGCGGCcGUGACGu- -3' miRNA: 3'- -UCG-CCGUUGU-CGUCGCCG-CACUGCug -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 224011 | 0.77 | 0.302827 |
Target: 5'- uGCGGCAGCGGCGGgccCGGCGgucggGGCGGg -3' miRNA: 3'- uCGCCGUUGUCGUC---GCCGCa----CUGCUg -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 59610 | 0.77 | 0.316537 |
Target: 5'- uAGUGGCGGCGGCcccGGCGGCGaccGCGGCu -3' miRNA: 3'- -UCGCCGUUGUCG---UCGCCGCac-UGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 191075 | 0.76 | 0.33797 |
Target: 5'- cGCGGCGACcgugguGGCGGCGGCG-GGCuGCg -3' miRNA: 3'- uCGCCGUUG------UCGUCGCCGCaCUGcUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 151450 | 0.76 | 0.352835 |
Target: 5'- uGCGGCGACAGguGaCGauaGCGUGuCGACg -3' miRNA: 3'- uCGCCGUUGUCguC-GC---CGCACuGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 132427 | 0.76 | 0.375987 |
Target: 5'- uGCGGCGACgccgcuGGUAGCGGUG-GugGGCu -3' miRNA: 3'- uCGCCGUUG------UCGUCGCCGCaCugCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 28252 | 0.75 | 0.408412 |
Target: 5'- aAGaCGGCGccgagaggaACAGCGGCGGCGaUGACaGCa -3' miRNA: 3'- -UC-GCCGU---------UGUCGUCGCCGC-ACUGcUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 145582 | 0.75 | 0.416788 |
Target: 5'- uGCGGCGGCAcgacGCGGCGGcCGUGGCc-- -3' miRNA: 3'- uCGCCGUUGU----CGUCGCC-GCACUGcug -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 116880 | 0.75 | 0.425267 |
Target: 5'- cAGUGGCGcgGCuGCGGCGGCGcGcCGGCg -3' miRNA: 3'- -UCGCCGU--UGuCGUCGCCGCaCuGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 77697 | 0.74 | 0.433848 |
Target: 5'- uGGCGaaGACAGCcguGGCGGCGUuguuGGCGACg -3' miRNA: 3'- -UCGCcgUUGUCG---UCGCCGCA----CUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 6201 | 0.74 | 0.442529 |
Target: 5'- uGCGGCAAguGacuguGCGGCaUGACGGCg -3' miRNA: 3'- uCGCCGUUguCgu---CGCCGcACUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 141364 | 0.74 | 0.442529 |
Target: 5'- uGCGGCGGCGGUcggugacGCGGUGcccgaUGACGACa -3' miRNA: 3'- uCGCCGUUGUCGu------CGCCGC-----ACUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 216828 | 0.74 | 0.450425 |
Target: 5'- uGGCGcGCAggaggucGCAGCccGCGGCG-GACGACu -3' miRNA: 3'- -UCGC-CGU-------UGUCGu-CGCCGCaCUGCUG- -5' |
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14197 | 3' | -58.5 | NC_003521.1 | + | 120926 | 0.74 | 0.451307 |
Target: 5'- uGCGGCugcccGCGGCGGCGGCuccGGCGAg -3' miRNA: 3'- uCGCCGu----UGUCGUCGCCGca-CUGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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