miRNA display CGI


Results 41 - 60 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 123711 0.76 0.352835
Target:  5'- aGGCGGCGGCuG-AGCGGCGgaGGCGGCc -3'
miRNA:   3'- -UCGCCGUUGuCgUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 186765 0.81 0.181304
Target:  5'- cGGCGGCAucgGCggaGGCGGCGGUGgUGGCGGCg -3'
miRNA:   3'- -UCGCCGU---UG---UCGUCGCCGC-ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 76358 0.92 0.032669
Target:  5'- uGCGGCGGCGGCAGCGGCGaccgUGACGGCc -3'
miRNA:   3'- uCGCCGUUGUCGUCGCCGC----ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 123548 0.76 0.352835
Target:  5'- gAGcCGGCAccacggccgacgACGGCGGUGGCGggaUGGCGGCg -3'
miRNA:   3'- -UC-GCCGU------------UGUCGUCGCCGC---ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 98637 0.97 0.015981
Target:  5'- cGGCGGCGGCGGUAGCGGCGUcGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCA-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 55921 0.73 0.505852
Target:  5'- cGGCGGCAACGGgggugcCAGCGGgGUaugaggccucuGugGACg -3'
miRNA:   3'- -UCGCCGUUGUC------GUCGCCgCA-----------CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 98472 0.9 0.04478
Target:  5'- cGGCGGCGGCcGCGGCGGcCGUGGCGGCg -3'
miRNA:   3'- -UCGCCGUUGuCGUCGCC-GCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 216915 0.73 0.487335
Target:  5'- cGCGGUGGCAGCGGaGGCG-GuCGACc -3'
miRNA:   3'- uCGCCGUUGUCGUCgCCGCaCuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 123642 0.74 0.46018
Target:  5'- gGGCGGCGGCAGCGaCGGCGgguuaGGCu -3'
miRNA:   3'- -UCGCCGUUGUCGUcGCCGCacug-CUG- -5'
14197 3' -58.5 NC_003521.1 + 143358 0.75 0.425267
Target:  5'- cGCGGguGagaAGCGGCGGCaacGACGACg -3'
miRNA:   3'- uCGCCguUg--UCGUCGCCGca-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 197271 0.75 0.408412
Target:  5'- cGCGGCGcCGGCGGCGGgGagcgggagGGCGGCu -3'
miRNA:   3'- uCGCCGUuGUCGUCGCCgCa-------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 155257 0.75 0.400143
Target:  5'- gGGgGGCGGCGGCGGCGGCGccucaGGCc -3'
miRNA:   3'- -UCgCCGUUGUCGUCGCCGCacug-CUG- -5'
14197 3' -58.5 NC_003521.1 + 123174 0.75 0.391982
Target:  5'- aGGUGGCGGCGGCGGCGGgG-GACcguaGGCc -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCgCaCUG----CUG- -5'
14197 3' -58.5 NC_003521.1 + 6501 0.76 0.345345
Target:  5'- aGGCGGUGACGGCAGaGGCucaccgGUGACGAg -3'
miRNA:   3'- -UCGCCGUUGUCGUCgCCG------CACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 161238 0.78 0.288928
Target:  5'- cGGCGGCAgcgGCAGUAGCGGCcaggaucagagcaGcGACGGCg -3'
miRNA:   3'- -UCGCCGU---UGUCGUCGCCG-------------CaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 207940 0.8 0.214409
Target:  5'- cGGCGGCAGCAcCGGCGGCGcgGGCGcCa -3'
miRNA:   3'- -UCGCCGUUGUcGUCGCCGCa-CUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 71859 0.81 0.190272
Target:  5'- cGuCGGCGACAGCAGCGGgaGcGACGGCg -3'
miRNA:   3'- uC-GCCGUUGUCGUCGCCg-CaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 113842 0.82 0.168554
Target:  5'- cAGCGGCAGCggGGCGGcCGGCGacGACGGCg -3'
miRNA:   3'- -UCGCCGUUG--UCGUC-GCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 140549 0.82 0.156613
Target:  5'- aGGCGGUGGCugcuGCGGCGGCGgcGGCGACa -3'
miRNA:   3'- -UCGCCGUUGu---CGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 76222 0.85 0.099807
Target:  5'- gAGUGGCGGCGGcCGGUGGCGUGGCGGu -3'
miRNA:   3'- -UCGCCGUUGUC-GUCGCCGCACUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.