miRNA display CGI


Results 61 - 80 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 123174 0.75 0.391982
Target:  5'- aGGUGGCGGCGGCGGCGGgG-GACcguaGGCc -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCgCaCUG----CUG- -5'
14197 3' -58.5 NC_003521.1 + 98250 0.75 0.408412
Target:  5'- gGGCGGCcACGGCGGgcacggcgagccUGGCG-GGCGACa -3'
miRNA:   3'- -UCGCCGuUGUCGUC------------GCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 85110 0.88 0.067925
Target:  5'- -uCGGCGGCGGCAGCGGCG-GGCGGCa -3'
miRNA:   3'- ucGCCGUUGUCGUCGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 108281 0.84 0.110454
Target:  5'- cGGCGGCAccgaggGCGGUGGUGGCgGUGACGACg -3'
miRNA:   3'- -UCGCCGU------UGUCGUCGCCG-CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 186639 0.82 0.160506
Target:  5'- uGGCGGCAagucgacgucgcGCGGCGGUGGCGgaGGCGGCg -3'
miRNA:   3'- -UCGCCGU------------UGUCGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 163354 0.81 0.175677
Target:  5'- uAGCGGUAGCAGCGGCGGCGgcaGugucacgggcaccaACGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCa--C--------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 117311 0.81 0.190272
Target:  5'- cGCGGauugcgGGCGGCAGCGGCGacGACGACa -3'
miRNA:   3'- uCGCCg-----UUGUCGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 69731 0.79 0.25257
Target:  5'- cGCGGUAACGGCgGGCGGgGaGGCGGCg -3'
miRNA:   3'- uCGCCGUUGUCG-UCGCCgCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 52669 0.77 0.296145
Target:  5'- gAGCGGCAGCAGCGGCaccggcaGCGUcGGCGGu -3'
miRNA:   3'- -UCGCCGUUGUCGUCGc------CGCA-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 108029 0.76 0.345345
Target:  5'- cGuCGGCGucaGGCGGCGGCGgGAUGACg -3'
miRNA:   3'- uC-GCCGUug-UCGUCGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 166657 0.71 0.611941
Target:  5'- cGCGGCGcaGCGGcCAGCGGCaccugggccccGUGGCG-Cg -3'
miRNA:   3'- uCGCCGU--UGUC-GUCGCCG-----------CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 7435 0.71 0.611941
Target:  5'- gAGaCGGCAGCGGCAGCuccGGaucccGGCGACg -3'
miRNA:   3'- -UC-GCCGUUGUCGUCG---CCgca--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 103645 0.75 0.425267
Target:  5'- cAGCGGgGGCAGCucGGCGGCGgccgcuGCGGCc -3'
miRNA:   3'- -UCGCCgUUGUCG--UCGCCGCac----UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 172072 0.74 0.442529
Target:  5'- uGCGuCAGgaccguCAGCGGCGGCGUGAUGAa -3'
miRNA:   3'- uCGCcGUU------GUCGUCGCCGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 216915 0.73 0.487335
Target:  5'- cGCGGUGGCAGCGGaGGCG-GuCGACc -3'
miRNA:   3'- uCGCCGUUGUCGUCgCCGCaCuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 55921 0.73 0.505852
Target:  5'- cGGCGGCAACGGgggugcCAGCGGgGUaugaggccucuGugGACg -3'
miRNA:   3'- -UCGCCGUUGUC------GUCGCCgCA-----------CugCUG- -5'
14197 3' -58.5 NC_003521.1 + 171679 0.73 0.524664
Target:  5'- cGGCGGCAugAcgAGCaacaaGCGUGACGACa -3'
miRNA:   3'- -UCGCCGUugUcgUCGc----CGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 76394 0.72 0.553358
Target:  5'- cGCGGUGGCgcugcuagcaccAGCGGCGGUGUGguggugcugGCGACc -3'
miRNA:   3'- uCGCCGUUG------------UCGUCGCCGCAC---------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 124158 0.72 0.572745
Target:  5'- --gGGCAACAGCGGCGGC-UGgagaGCGAg -3'
miRNA:   3'- ucgCCGUUGUCGUCGCCGcAC----UGCUg -5'
14197 3' -58.5 NC_003521.1 + 186930 0.71 0.592289
Target:  5'- cGGUGGCGGgGGCGGCGGCGa-ACG-Ca -3'
miRNA:   3'- -UCGCCGUUgUCGUCGCCGCacUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.