miRNA display CGI


Results 81 - 100 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 148445 0.74 0.433848
Target:  5'- cGGCGgaGCGACGGCAGCGgGCGagcgGACGGg -3'
miRNA:   3'- -UCGC--CGUUGUCGUCGC-CGCa---CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 7737 0.74 0.469144
Target:  5'- gGGCGGCGcgAGCGGCGGa--GGCGGCg -3'
miRNA:   3'- -UCGCCGUugUCGUCGCCgcaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 109340 0.73 0.496554
Target:  5'- aGGCGGCAGCAGC--CGGCGcagGAggcCGACg -3'
miRNA:   3'- -UCGCCGUUGUCGucGCCGCa--CU---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 148560 0.73 0.515223
Target:  5'- cGGcCGGUAGCGGCAGCGGCacccagggaggGUcGACGGg -3'
miRNA:   3'- -UC-GCCGUUGUCGUCGCCG-----------CA-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 16976 0.72 0.541818
Target:  5'- cAGCcGCAGCAGCAGCcgcagggacagcaGGCGcccgcggUGGCGGCg -3'
miRNA:   3'- -UCGcCGUUGUCGUCG-------------CCGC-------ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 124158 0.72 0.572745
Target:  5'- --gGGCAACAGCGGCGGC-UGgagaGCGAg -3'
miRNA:   3'- ucgCCGUUGUCGUCGCCGcAC----UGCUg -5'
14197 3' -58.5 NC_003521.1 + 186930 0.71 0.592289
Target:  5'- cGGUGGCGGgGGCGGCGGCGa-ACG-Ca -3'
miRNA:   3'- -UCGCCGUUgUCGUCGCCGCacUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 108029 0.76 0.345345
Target:  5'- cGuCGGCGucaGGCGGCGGCGgGAUGACg -3'
miRNA:   3'- uC-GCCGUug-UCGUCGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 52669 0.77 0.296145
Target:  5'- gAGCGGCAGCAGCGGCaccggcaGCGUcGGCGGu -3'
miRNA:   3'- -UCGCCGUUGUCGUCGc------CGCA-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 69731 0.79 0.25257
Target:  5'- cGCGGUAACGGCgGGCGGgGaGGCGGCg -3'
miRNA:   3'- uCGCCGUUGUCG-UCGCCgCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 169677 0.71 0.631649
Target:  5'- aGGaGGCAACAGCAGaggaggaGGCGgcGACGAg -3'
miRNA:   3'- -UCgCCGUUGUCGUCg------CCGCa-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 169441 0.71 0.641506
Target:  5'- cGCGGaCGACGGCGuCGGCG--GCGGCg -3'
miRNA:   3'- uCGCC-GUUGUCGUcGCCGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 86423 0.7 0.660211
Target:  5'- cGCGuGCccgccuccugauuGGCGGCAGCGGCGaccGAgGACg -3'
miRNA:   3'- uCGC-CG-------------UUGUCGUCGCCGCa--CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 190567 0.7 0.671009
Target:  5'- uGCaGCGGCAGUA-CGGCGUGAuCGAg -3'
miRNA:   3'- uCGcCGUUGUCGUcGCCGCACU-GCUg -5'
14197 3' -58.5 NC_003521.1 + 181466 0.7 0.676885
Target:  5'- cAGCGGCuggcgcgccgccuGCAGC-GUGGCGUGGCu-- -3'
miRNA:   3'- -UCGCCGu------------UGUCGuCGCCGCACUGcug -5'
14197 3' -58.5 NC_003521.1 + 85110 0.88 0.067925
Target:  5'- -uCGGCGGCGGCAGCGGCG-GGCGGCa -3'
miRNA:   3'- ucGCCGUUGUCGUCGCCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 108281 0.84 0.110454
Target:  5'- cGGCGGCAccgaggGCGGUGGUGGCgGUGACGACg -3'
miRNA:   3'- -UCGCCGU------UGUCGUCGCCG-CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 186639 0.82 0.160506
Target:  5'- uGGCGGCAagucgacgucgcGCGGCGGUGGCGgaGGCGGCg -3'
miRNA:   3'- -UCGCCGU------------UGUCGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 163354 0.81 0.175677
Target:  5'- uAGCGGUAGCAGCGGCGGCGgcaGugucacgggcaccaACGGCg -3'
miRNA:   3'- -UCGCCGUUGUCGUCGCCGCa--C--------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 117311 0.81 0.190272
Target:  5'- cGCGGauugcgGGCGGCAGCGGCGacGACGACa -3'
miRNA:   3'- uCGCCg-----UUGUCGUCGCCGCa-CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.