miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 73278 1.06 0.008491
Target:  5'- aUUACCGACACGUCCGCUCUAUCGCCGu -3'
miRNA:   3'- -AAUGGCUGUGCAGGCGAGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 72469 0.75 0.5969
Target:  5'- cUGCCGcuACGCG-CCGCUCU-UCGCCa -3'
miRNA:   3'- aAUGGC--UGUGCaGGCGAGAuAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 221942 0.74 0.626803
Target:  5'- aUGCaCGACACGUCCagGCg--GUCGCCGu -3'
miRNA:   3'- aAUG-GCUGUGCAGG--CGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 164496 0.74 0.636788
Target:  5'- -cACCGuCGCcUCCGCagCUGUCGCCGc -3'
miRNA:   3'- aaUGGCuGUGcAGGCGa-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 168960 0.73 0.696355
Target:  5'- -cGCCGuCGCucCCGCUgCUGUCGCCGa -3'
miRNA:   3'- aaUGGCuGUGcaGGCGA-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 129433 0.73 0.706152
Target:  5'- -aGCCGcugcaGCGCGUCCcCUCcGUCGCCGc -3'
miRNA:   3'- aaUGGC-----UGUGCAGGcGAGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 124336 0.73 0.735149
Target:  5'- -gGCCGuCACGgaCGCUCUucAUCGCCGc -3'
miRNA:   3'- aaUGGCuGUGCagGCGAGA--UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 166235 0.72 0.740864
Target:  5'- -cGCCGGcCGCGggacgccgcgccgCCGCUCcGUCGCCGc -3'
miRNA:   3'- aaUGGCU-GUGCa------------GGCGAGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 97925 0.72 0.74371
Target:  5'- -cGCCGGCugaugGCG-CCGCUCUccaagggAUCGCCGc -3'
miRNA:   3'- aaUGGCUG-----UGCaGGCGAGA-------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 135892 0.72 0.744656
Target:  5'- -aACCGACgGCGUCgCGCUC-GUCGUCa -3'
miRNA:   3'- aaUGGCUG-UGCAG-GCGAGaUAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 112885 0.72 0.781661
Target:  5'- -gGCCGACgACGUcagCCGCgagAUCGCCGc -3'
miRNA:   3'- aaUGGCUG-UGCA---GGCGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 206751 0.71 0.816625
Target:  5'- -cGCCGAC-UG-CCGCcgaCUAUCGCCGa -3'
miRNA:   3'- aaUGGCUGuGCaGGCGa--GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 118207 0.7 0.841202
Target:  5'- -cGCCGAgCGCGcggCCGCcgCcGUCGCCGg -3'
miRNA:   3'- aaUGGCU-GUGCa--GGCGa-GaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 217301 0.7 0.856695
Target:  5'- -cACCGugAUGaggCUGCUCguuUCGCCGu -3'
miRNA:   3'- aaUGGCugUGCa--GGCGAGau-AGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 233082 0.7 0.856695
Target:  5'- cUGCCGcCGCcUCCGCcgCUcgCGCCGc -3'
miRNA:   3'- aAUGGCuGUGcAGGCGa-GAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 161201 0.7 0.864154
Target:  5'- -cGCCGAgGCG-CCGCg--GUCGCCc -3'
miRNA:   3'- aaUGGCUgUGCaGGCGagaUAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 210280 0.7 0.864154
Target:  5'- -gGCCGGCGCGUCCGUaCcg-UGCCc -3'
miRNA:   3'- aaUGGCUGUGCAGGCGaGauaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 196128 0.7 0.871414
Target:  5'- -cGCCGGCccguuuCGUCCGCUgCUggCGCUGc -3'
miRNA:   3'- aaUGGCUGu-----GCAGGCGA-GAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 25333 0.7 0.871414
Target:  5'- -gGCCGGCACGUuguccCUGCUCcuggccuUCGCCu -3'
miRNA:   3'- aaUGGCUGUGCA-----GGCGAGau-----AGCGGc -5'
14197 5' -55.2 NC_003521.1 + 85247 0.69 0.879164
Target:  5'- -gGCCGGCGCGcaaauaacuggcuacCCGCUCcgcgCGCCGg -3'
miRNA:   3'- aaUGGCUGUGCa--------------GGCGAGaua-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.