miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 148943 0.68 0.937013
Target:  5'- gUGCUGGCGCGUgUGCUgCUGgagggcagCGCCa -3'
miRNA:   3'- aAUGGCUGUGCAgGCGA-GAUa-------GCGGc -5'
14197 5' -55.2 NC_003521.1 + 5544 0.68 0.921267
Target:  5'- -aGCCGGCGCGgccgCCGCcaucguuguuccgUCcGUCGCUGu -3'
miRNA:   3'- aaUGGCUGUGCa---GGCG-------------AGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 4355 0.68 0.921809
Target:  5'- -cGCCGGCG-GUUCGCUC-AUCGCgGc -3'
miRNA:   3'- aaUGGCUGUgCAGGCGAGaUAGCGgC- -5'
14197 5' -55.2 NC_003521.1 + 128059 0.68 0.921809
Target:  5'- -gGCCGACGCG-CCGCgcgaUGcCGCCc -3'
miRNA:   3'- aaUGGCUGUGCaGGCGag--AUaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 227972 0.68 0.921809
Target:  5'- gUACCGcUGCGUCUGCUCg--CGCaCGu -3'
miRNA:   3'- aAUGGCuGUGCAGGCGAGauaGCG-GC- -5'
14197 5' -55.2 NC_003521.1 + 104156 0.68 0.927105
Target:  5'- --cCCGGCGCcuGUguggcuucUUGCUCUGUCGCCGc -3'
miRNA:   3'- aauGGCUGUG--CA--------GGCGAGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 167581 0.68 0.927105
Target:  5'- --gUCGuCACG-CCGCUgCUGUUGCCGc -3'
miRNA:   3'- aauGGCuGUGCaGGCGA-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 126956 0.68 0.932172
Target:  5'- gUGCCGcCGCGgaacCCGCgccgucGUCGCCGg -3'
miRNA:   3'- aAUGGCuGUGCa---GGCGaga---UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 105599 0.68 0.932172
Target:  5'- -cGCCGGCGCaG-CCGCUCaggCGCUGc -3'
miRNA:   3'- aaUGGCUGUG-CaGGCGAGauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 18703 0.69 0.910538
Target:  5'- -gGCCGGCGCGaUCCGg-CUGUgGCUGc -3'
miRNA:   3'- aaUGGCUGUGC-AGGCgaGAUAgCGGC- -5'
14197 5' -55.2 NC_003521.1 + 129597 0.69 0.898368
Target:  5'- -cGCCGGC-CGcgaCGCUCUaauagucgaGUCGCCGg -3'
miRNA:   3'- aaUGGCUGuGCag-GCGAGA---------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 129736 0.69 0.898368
Target:  5'- -gACgCGAgCGCGUCCGCgccgUCU-UCGCCGc -3'
miRNA:   3'- aaUG-GCU-GUGCAGGCG----AGAuAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 168960 0.73 0.696355
Target:  5'- -cGCCGuCGCucCCGCUgCUGUCGCCGa -3'
miRNA:   3'- aaUGGCuGUGcaGGCGA-GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 112885 0.72 0.781661
Target:  5'- -gGCCGACgACGUcagCCGCgagAUCGCCGc -3'
miRNA:   3'- aaUGGCUG-UGCA---GGCGagaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 206751 0.71 0.816625
Target:  5'- -cGCCGAC-UG-CCGCcgaCUAUCGCCGa -3'
miRNA:   3'- aaUGGCUGuGCaGGCGa--GAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 118207 0.7 0.841202
Target:  5'- -cGCCGAgCGCGcggCCGCcgCcGUCGCCGg -3'
miRNA:   3'- aaUGGCU-GUGCa--GGCGa-GaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 233082 0.7 0.856695
Target:  5'- cUGCCGcCGCcUCCGCcgCUcgCGCCGc -3'
miRNA:   3'- aAUGGCuGUGcAGGCGa-GAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 210280 0.7 0.864154
Target:  5'- -gGCCGGCGCGUCCGUaCcg-UGCCc -3'
miRNA:   3'- aaUGGCUGUGCAGGCGaGauaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 196128 0.7 0.871414
Target:  5'- -cGCCGGCccguuuCGUCCGCUgCUggCGCUGc -3'
miRNA:   3'- aaUGGCUGu-----GCAGGCGA-GAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 85247 0.69 0.879164
Target:  5'- -gGCCGGCGCGcaaauaacuggcuacCCGCUCcgcgCGCCGg -3'
miRNA:   3'- aaUGGCUGUGCa--------------GGCGAGaua-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.