miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 5' -55.2 NC_003521.1 + 111707 0.66 0.967786
Target:  5'- -cGCCGACGuccaGUCCGUg----CGCCGg -3'
miRNA:   3'- aaUGGCUGUg---CAGGCGagauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 113582 0.66 0.967786
Target:  5'- -cGCCGACGag-CCGCUCU-UCGUgGa -3'
miRNA:   3'- aaUGGCUGUgcaGGCGAGAuAGCGgC- -5'
14197 5' -55.2 NC_003521.1 + 132460 0.66 0.967786
Target:  5'- --uUCGGCGCGUCCGgUCa---GCCGu -3'
miRNA:   3'- aauGGCUGUGCAGGCgAGauagCGGC- -5'
14197 5' -55.2 NC_003521.1 + 222105 0.66 0.967786
Target:  5'- -cGCCGGCAgCGUCUcgagGCgCUG-CGCCGg -3'
miRNA:   3'- aaUGGCUGU-GCAGG----CGaGAUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 89317 0.66 0.967786
Target:  5'- -gGCCGACGgcgguaguucacCGUCCGCgaUGUCGCa- -3'
miRNA:   3'- aaUGGCUGU------------GCAGGCGagAUAGCGgc -5'
14197 5' -55.2 NC_003521.1 + 31761 0.66 0.964682
Target:  5'- -gACCGGCACaucgggGUCgCGC-CaGUCGCCGc -3'
miRNA:   3'- aaUGGCUGUG------CAG-GCGaGaUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 11324 0.66 0.964682
Target:  5'- -cACCGGCACGUUCGac--GUCGCUu -3'
miRNA:   3'- aaUGGCUGUGCAGGCgagaUAGCGGc -5'
14197 5' -55.2 NC_003521.1 + 117773 0.66 0.964682
Target:  5'- --gUCGcACACG-CUGCggaUCUAUCGCCGu -3'
miRNA:   3'- aauGGC-UGUGCaGGCG---AGAUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 226893 0.66 0.964682
Target:  5'- gUACUGGCAuuUGUcuuaCCGCUCaagGUCGUCGg -3'
miRNA:   3'- aAUGGCUGU--GCA----GGCGAGa--UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 108234 0.66 0.963711
Target:  5'- -cGCCGACGcCG-CCGCUUccaucaucuucuggUGUCGaCCGg -3'
miRNA:   3'- aaUGGCUGU-GCaGGCGAG--------------AUAGC-GGC- -5'
14197 5' -55.2 NC_003521.1 + 79106 0.67 0.961374
Target:  5'- -gACCu-CGCGcaaCCGCUCggUGUCGCCGu -3'
miRNA:   3'- aaUGGcuGUGCa--GGCGAG--AUAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 109599 0.67 0.961374
Target:  5'- -cGCCGuCGCGacgCUGuCUCUggCGCCGg -3'
miRNA:   3'- aaUGGCuGUGCa--GGC-GAGAuaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 53517 0.67 0.961374
Target:  5'- gUUGuCCGACGCGgCCGCUCccaccgggcUGCCGa -3'
miRNA:   3'- -AAU-GGCUGUGCaGGCGAGaua------GCGGC- -5'
14197 5' -55.2 NC_003521.1 + 1294 0.67 0.961374
Target:  5'- -cGCCGACGaaugguUCCGCUacggCGCCGg -3'
miRNA:   3'- aaUGGCUGUgc----AGGCGAgauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 201522 0.67 0.961374
Target:  5'- -cGCCGACGaaugguUCCGCUacggCGCCGg -3'
miRNA:   3'- aaUGGCUGUgc----AGGCGAgauaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 238628 0.67 0.960688
Target:  5'- -gGCCGGC-CGUCCGUUCcccgaacgggcgGUUGCUGc -3'
miRNA:   3'- aaUGGCUGuGCAGGCGAGa-----------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 38401 0.67 0.960688
Target:  5'- -gGCCGGC-CGUCCGUUCcccgaacgggcgGUUGCUGc -3'
miRNA:   3'- aaUGGCUGuGCAGGCGAGa-----------UAGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 74606 0.67 0.957858
Target:  5'- -gGCCGGCGCGccucgCCGC-Cg--CGCCa -3'
miRNA:   3'- aaUGGCUGUGCa----GGCGaGauaGCGGc -5'
14197 5' -55.2 NC_003521.1 + 70686 0.67 0.957858
Target:  5'- -aACCGACgGCGUCUGCgccgcaagCUG-CGUCGg -3'
miRNA:   3'- aaUGGCUG-UGCAGGCGa-------GAUaGCGGC- -5'
14197 5' -55.2 NC_003521.1 + 182049 0.67 0.957858
Target:  5'- -cGCCGGCGCGcgCCGCcCUgcaGUgGCUGg -3'
miRNA:   3'- aaUGGCUGUGCa-GGCGaGA---UAgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.