miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
142 5' -57.9 AC_000006.1 + 19591 0.66 0.453554
Target:  5'- gGCGCC---GUCGACGCgcaGGUCGuuGCCGa -3'
miRNA:   3'- aCGCGGuaaCAGUUGUG---CCGGC--CGGC- -5'
142 5' -57.9 AC_000006.1 + 10974 0.66 0.423946
Target:  5'- cGCGCCGcgcaCGugGCGGC-GGCCa -3'
miRNA:   3'- aCGCGGUaacaGUugUGCCGgCCGGc -5'
142 5' -57.9 AC_000006.1 + 18118 0.66 0.423946
Target:  5'- gGaCGCCGcggaUGUCAAagUACGuGCUGGCCa -3'
miRNA:   3'- aC-GCGGUa---ACAGUU--GUGC-CGGCCGGc -5'
142 5' -57.9 AC_000006.1 + 23471 0.66 0.414336
Target:  5'- cUGCGCU----UgAGCACGGCCaGCCu -3'
miRNA:   3'- -ACGCGGuaacAgUUGUGCCGGcCGGc -5'
142 5' -57.9 AC_000006.1 + 13191 0.67 0.368363
Target:  5'- cGC-CCAgca--AGCGCGGCCGGCUc -3'
miRNA:   3'- aCGcGGUaacagUUGUGCCGGCCGGc -5'
142 5' -57.9 AC_000006.1 + 3700 0.67 0.359598
Target:  5'- -uCGUCGcUGUCAugGCGGCugCGGCUGc -3'
miRNA:   3'- acGCGGUaACAGUugUGCCG--GCCGGC- -5'
142 5' -57.9 AC_000006.1 + 12827 0.68 0.326014
Target:  5'- cGCGCgGUcaUGUcCAGCGCGGCgcugggagUGGCCc -3'
miRNA:   3'- aCGCGgUA--ACA-GUUGUGCCG--------GCCGGc -5'
142 5' -57.9 AC_000006.1 + 17008 0.7 0.245901
Target:  5'- uUGCGUCccUGgcuccgCGGCACGGCacgCGGCCGu -3'
miRNA:   3'- -ACGCGGuaACa-----GUUGUGCCG---GCCGGC- -5'
142 5' -57.9 AC_000006.1 + 23382 0.7 0.227087
Target:  5'- aGCGCCcugguagaGUUGgaaggCGACAacgccaGGCUGGCCGu -3'
miRNA:   3'- aCGCGG--------UAACa----GUUGUg-----CCGGCCGGC- -5'
142 5' -57.9 AC_000006.1 + 10132 0.75 0.10702
Target:  5'- aGCGgcaggaaauaguCCAUgGUCGGCACGGuCUGGCCGg -3'
miRNA:   3'- aCGC------------GGUAaCAGUUGUGCC-GGCCGGC- -5'
142 5' -57.9 AC_000006.1 + 20794 0.76 0.089979
Target:  5'- -aCGCCuccgGUCu-CGCGGCCGGCCGu -3'
miRNA:   3'- acGCGGuaa-CAGuuGUGCCGGCCGGC- -5'
142 5' -57.9 AC_000006.1 + 20719 1.08 0.000369
Target:  5'- cUGCGCCAUUGUCAACACGGCCGGCCGc -3'
miRNA:   3'- -ACGCGGUAACAGUUGUGCCGGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.