Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1420 | 3' | -52.1 | NC_001335.1 | + | 23893 | 0.69 | 0.654641 |
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Target: 5'- --gGugAUCGUCUugGUCGACAacgggauguguaccCCGCg -3' miRNA: 3'- uagUugUAGCGGAugCAGCUGU--------------GGUG- -5' |
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| 1420 | 3' | -52.1 | NC_001335.1 | + | 48233 | 0.7 | 0.601195 |
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Target: 5'- gAUCAGC-UCGCCUACGaugccagCGugGaCCACc -3' miRNA: 3'- -UAGUUGuAGCGGAUGCa------GCugU-GGUG- -5' |
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| 1420 | 3' | -52.1 | NC_001335.1 | + | 34326 | 0.7 | 0.601195 |
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Target: 5'- -aCGGCAUCGCCgcgauggAgGUCGACcacGCCAUc -3' miRNA: 3'- uaGUUGUAGCGGa------UgCAGCUG---UGGUG- -5' |
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| 1420 | 3' | -52.1 | NC_001335.1 | + | 12987 | 0.7 | 0.601195 |
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Target: 5'- gGUCGcUcgCGCUcACGUCGGCAUCACc -3' miRNA: 3'- -UAGUuGuaGCGGaUGCAGCUGUGGUG- -5' |
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| 1420 | 3' | -52.1 | NC_001335.1 | + | 9679 | 0.71 | 0.589867 |
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Target: 5'- -aCAGCuUCGUggCUGCGUCGGCcuugGCCGCg -3' miRNA: 3'- uaGUUGuAGCG--GAUGCAGCUG----UGGUG- -5' |
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| 1420 | 3' | -52.1 | NC_001335.1 | + | 36717 | 0.71 | 0.545029 |
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Target: 5'- gGUCGugGUUGCCcuCGUgGACACCAa -3' miRNA: 3'- -UAGUugUAGCGGauGCAgCUGUGGUg -5' |
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| 1420 | 3' | -52.1 | NC_001335.1 | + | 8725 | 0.72 | 0.501348 |
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Target: 5'- cUCuuCGUCaGCCU-CGUCGGCAUCGCc -3' miRNA: 3'- uAGuuGUAG-CGGAuGCAGCUGUGGUG- -5' |
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| 1420 | 3' | -52.1 | NC_001335.1 | + | 5355 | 0.74 | 0.40946 |
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Target: 5'- -cCGAgAUCGCCUGCG-CGagcGCGCCGCu -3' miRNA: 3'- uaGUUgUAGCGGAUGCaGC---UGUGGUG- -5' |
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| 1420 | 3' | -52.1 | NC_001335.1 | + | 8101 | 0.74 | 0.390498 |
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Target: 5'- gGUCGACGUaCGCCUcgaacuccuucACGUCGGCgcggaacgccACCACg -3' miRNA: 3'- -UAGUUGUA-GCGGA-----------UGCAGCUG----------UGGUG- -5' |
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| 1420 | 3' | -52.1 | NC_001335.1 | + | 49848 | 1.09 | 0.001886 |
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Target: 5'- cAUCAACAUCGCCUACGUCGACACCACg -3' miRNA: 3'- -UAGUUGUAGCGGAUGCAGCUGUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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