miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1420 5' -57.4 NC_001335.1 + 10820 0.66 0.630578
Target:  5'- gAGGCcgagaccccgGAGGUCGAGaagCCGAUGGaaccgcaGGg -3'
miRNA:   3'- -UCCG----------UUCCGGCUCaaaGGCUGCCg------CC- -5'
1420 5' -57.4 NC_001335.1 + 3302 0.66 0.59819
Target:  5'- cAGGCAgagcaucucgAGGUCGAGUggguugCCGA-GGuCGGc -3'
miRNA:   3'- -UCCGU----------UCCGGCUCAaa----GGCUgCC-GCC- -5'
1420 5' -57.4 NC_001335.1 + 32114 0.66 0.587439
Target:  5'- cGGCAGuuGCCGGGUU-CgGuCGGUGGa -3'
miRNA:   3'- uCCGUUc-CGGCUCAAaGgCuGCCGCC- -5'
1420 5' -57.4 NC_001335.1 + 32883 0.67 0.56286
Target:  5'- cAGGCucAGGaGCCGGGg--CCGGCucgggcugggcaggGGCGGu -3'
miRNA:   3'- -UCCG--UUC-CGGCUCaaaGGCUG--------------CCGCC- -5'
1420 5' -57.4 NC_001335.1 + 11747 0.67 0.544871
Target:  5'- cAGGUAGuuGGCCGGGU--UCGcACGGaCGGu -3'
miRNA:   3'- -UCCGUU--CCGGCUCAaaGGC-UGCC-GCC- -5'
1420 5' -57.4 NC_001335.1 + 8179 0.67 0.534376
Target:  5'- aGGGCGAGGUCuGGca--CGACGGCa- -3'
miRNA:   3'- -UCCGUUCCGGcUCaaagGCUGCCGcc -5'
1420 5' -57.4 NC_001335.1 + 27177 0.67 0.523953
Target:  5'- cGGCAAGGCCGA-----UGAUGGCu- -3'
miRNA:   3'- uCCGUUCCGGCUcaaagGCUGCCGcc -5'
1420 5' -57.4 NC_001335.1 + 47169 0.68 0.502329
Target:  5'- aAGGCAcGGCuCGAGUUgcgucucUCCaacGCGGCGc -3'
miRNA:   3'- -UCCGUuCCG-GCUCAA-------AGGc--UGCCGCc -5'
1420 5' -57.4 NC_001335.1 + 35147 0.68 0.487124
Target:  5'- cAGGCccGGUCGAGUacggggucucguucUCUGGCGGCGa -3'
miRNA:   3'- -UCCGuuCCGGCUCAa-------------AGGCUGCCGCc -5'
1420 5' -57.4 NC_001335.1 + 23733 0.68 0.483107
Target:  5'- aAGGCAuGGCCcuGg--CUGACGGCuGGg -3'
miRNA:   3'- -UCCGUuCCGGcuCaaaGGCUGCCG-CC- -5'
1420 5' -57.4 NC_001335.1 + 32844 0.68 0.463263
Target:  5'- cAGcCGAGGCCGucgucaccGUcgCCGACGGCGcGg -3'
miRNA:   3'- -UCcGUUCCGGCu-------CAaaGGCUGCCGC-C- -5'
1420 5' -57.4 NC_001335.1 + 23889 0.68 0.463263
Target:  5'- cAGGCAAGGCCGgAGgccCUGgaggaaacaccACGGCGu -3'
miRNA:   3'- -UCCGUUCCGGC-UCaaaGGC-----------UGCCGCc -5'
1420 5' -57.4 NC_001335.1 + 7071 0.69 0.406462
Target:  5'- aAGGCuacgGGGCCacaGAG-UUCCGccaagcagagcGCGGCGGu -3'
miRNA:   3'- -UCCGu---UCCGG---CUCaAAGGC-----------UGCCGCC- -5'
1420 5' -57.4 NC_001335.1 + 8618 0.7 0.388522
Target:  5'- gAGcGCcAGGCCGucgagGGUUUCCGccuCGGCGa -3'
miRNA:   3'- -UC-CGuUCCGGC-----UCAAAGGCu--GCCGCc -5'
1420 5' -57.4 NC_001335.1 + 783 0.7 0.379749
Target:  5'- uGGCAgucggaAGGaauCGAGgugaUUCCGACGGCGu -3'
miRNA:   3'- uCCGU------UCCg--GCUCa---AAGGCUGCCGCc -5'
1420 5' -57.4 NC_001335.1 + 4086 0.7 0.362605
Target:  5'- cGGCGAGGCag-----CCGGCGGCGa -3'
miRNA:   3'- uCCGUUCCGgcucaaaGGCUGCCGCc -5'
1420 5' -57.4 NC_001335.1 + 46498 0.71 0.346006
Target:  5'- gAGGagaaCAAGGCCGuGgaaucggCCGGCGGgGGa -3'
miRNA:   3'- -UCC----GUUCCGGCuCaaa----GGCUGCCgCC- -5'
1420 5' -57.4 NC_001335.1 + 7288 0.71 0.322143
Target:  5'- uGGUggGGCCaAGgccCCGACGGCa- -3'
miRNA:   3'- uCCGuuCCGGcUCaaaGGCUGCCGcc -5'
1420 5' -57.4 NC_001335.1 + 40060 0.71 0.322143
Target:  5'- cGGGCGAGGCCG-GUgaacUCCuGGCcGUGGa -3'
miRNA:   3'- -UCCGUUCCGGCuCAa---AGG-CUGcCGCC- -5'
1420 5' -57.4 NC_001335.1 + 1252 0.71 0.322143
Target:  5'- cGGUGGcGGCgGaAGUggagCCGGCGGCGGu -3'
miRNA:   3'- uCCGUU-CCGgC-UCAaa--GGCUGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.