miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14201 3' -56.1 NC_003521.1 + 12286 0.66 0.958802
Target:  5'- aCGGuCGGUGGAGAcgUCucCCUGAacuCCa- -3'
miRNA:   3'- cGCC-GCCACCUCUa-AGu-GGACU---GGcu -5'
14201 3' -56.1 NC_003521.1 + 76208 0.66 0.958802
Target:  5'- cGCGGUGGUGGuauGAguggCGgC-GGCCGGu -3'
miRNA:   3'- -CGCCGCCACCu--CUaa--GUgGaCUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 131569 0.66 0.958802
Target:  5'- aCGGUGGUGGGccagaGCCUGAUCa- -3'
miRNA:   3'- cGCCGCCACCUcuaagUGGACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 123181 0.66 0.955182
Target:  5'- gGCGGCGGcGGGGG---ACCguaGGCCGc -3'
miRNA:   3'- -CGCCGCCaCCUCUaagUGGa--CUGGCu -5'
14201 3' -56.1 NC_003521.1 + 166220 0.66 0.955182
Target:  5'- cGCGGCGGc-GAGGcgCGCC-GGCCGc -3'
miRNA:   3'- -CGCCGCCacCUCUaaGUGGaCUGGCu -5'
14201 3' -56.1 NC_003521.1 + 191036 0.66 0.955182
Target:  5'- -gGGCGGc--AGcgUCugCUGGCCGAc -3'
miRNA:   3'- cgCCGCCaccUCuaAGugGACUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 155248 0.67 0.952909
Target:  5'- gGUGGUGGUGGGGGgcggcggcggcggCGCCUcaGGCCc- -3'
miRNA:   3'- -CGCCGCCACCUCUaa-----------GUGGA--CUGGcu -5'
14201 3' -56.1 NC_003521.1 + 16214 0.67 0.951744
Target:  5'- gGUGGCGGcgcccugcCGCCUGGCCGAg -3'
miRNA:   3'- -CGCCGCCaccucuaaGUGGACUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 28472 0.67 0.951352
Target:  5'- gGCGGUgcaccagcgGGUGGuGAUggGCgUGACCGu -3'
miRNA:   3'- -CGCCG---------CCACCuCUAagUGgACUGGCu -5'
14201 3' -56.1 NC_003521.1 + 123585 0.67 0.951352
Target:  5'- gGCGGCGGcgccgGGAGc--CGCCgcGGCCGu -3'
miRNA:   3'- -CGCCGCCa----CCUCuaaGUGGa-CUGGCu -5'
14201 3' -56.1 NC_003521.1 + 72995 0.67 0.938574
Target:  5'- cGCGGCGGUcgugcccgGGGGggUCcagcuCCUGuccaacGCCGAc -3'
miRNA:   3'- -CGCCGCCA--------CCUCuaAGu----GGAC------UGGCU- -5'
14201 3' -56.1 NC_003521.1 + 92030 0.67 0.93531
Target:  5'- gGCGGCGGUGGGuccggggguccccGGggUGCCUcccguagcgauggcgGACCGGg -3'
miRNA:   3'- -CGCCGCCACCU-------------CUaaGUGGA---------------CUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 57135 0.67 0.933878
Target:  5'- cGCGGUgGGUGGAGGUgaCGCUUGAgagCGGu -3'
miRNA:   3'- -CGCCG-CCACCUCUAa-GUGGACUg--GCU- -5'
14201 3' -56.1 NC_003521.1 + 198948 0.67 0.933878
Target:  5'- -aGGCaGUGGAGGUugggCACCaGGCgCGAg -3'
miRNA:   3'- cgCCGcCACCUCUAa---GUGGaCUG-GCU- -5'
14201 3' -56.1 NC_003521.1 + 22525 0.67 0.933878
Target:  5'- uGCGGUGaGaGGAGcgUCauagGCCUGGCCu- -3'
miRNA:   3'- -CGCCGC-CaCCUCuaAG----UGGACUGGcu -5'
14201 3' -56.1 NC_003521.1 + 127683 0.67 0.930954
Target:  5'- gGCGGCGGguccagaGcGAGAgcacaucgucgcgCACCUGGCCcGAg -3'
miRNA:   3'- -CGCCGCCa------C-CUCUaa-----------GUGGACUGG-CU- -5'
14201 3' -56.1 NC_003521.1 + 143954 0.67 0.928961
Target:  5'- gGUGGUGGUGGGGAcacccaacUUCGCCgucaCGGc -3'
miRNA:   3'- -CGCCGCCACCUCU--------AAGUGGacugGCU- -5'
14201 3' -56.1 NC_003521.1 + 131370 0.67 0.928961
Target:  5'- uCGGCGGcaUGGAG-UUCGCCgaggUGACgGGc -3'
miRNA:   3'- cGCCGCC--ACCUCuAAGUGG----ACUGgCU- -5'
14201 3' -56.1 NC_003521.1 + 112368 0.67 0.928961
Target:  5'- cGCGGCGGcUGcGGcgUCucguccACCUGGCUGGc -3'
miRNA:   3'- -CGCCGCC-ACcUCuaAG------UGGACUGGCU- -5'
14201 3' -56.1 NC_003521.1 + 124165 0.67 0.927951
Target:  5'- aGCGGCGGcUGGAGAgcgaga-GGCCGGc -3'
miRNA:   3'- -CGCCGCC-ACCUCUaaguggaCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.