Results 21 - 40 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14201 | 5' | -64 | NC_003521.1 | + | 118189 | 0.66 | 0.673257 |
Target: 5'- cGCCGgCAaagucGGGGCCgccgagcgcgcggCCGcCGCCGUCg -3' miRNA: 3'- aCGGUgGU-----CCCUGGa------------GGCcGCGGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 226063 | 0.66 | 0.667618 |
Target: 5'- gGCCACgaAGGcgcgccccGGCCgcggCCGGC-CCGUCa -3' miRNA: 3'- aCGGUGg-UCC--------CUGGa---GGCCGcGGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 201379 | 0.66 | 0.667618 |
Target: 5'- cUGCCGuccCCGGGaGCCa-CGGCGCCGcCu -3' miRNA: 3'- -ACGGU---GGUCCcUGGagGCCGCGGCaG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 142154 | 0.66 | 0.667618 |
Target: 5'- cGCCACCuaaGG-UCUCCGcGCaagcucGCCGUCg -3' miRNA: 3'- aCGGUGGuc-CCuGGAGGC-CG------CGGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 107053 | 0.66 | 0.667618 |
Target: 5'- gGCUACUgAGGGACgagacguuCUCCgGGCGgUGUCg -3' miRNA: 3'- aCGGUGG-UCCCUG--------GAGG-CCGCgGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 76274 | 0.66 | 0.667618 |
Target: 5'- gGCCGCCuGcGaGACCUCgCGGuCGUCGa- -3' miRNA: 3'- aCGGUGGuC-C-CUGGAG-GCC-GCGGCag -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 90491 | 0.66 | 0.667618 |
Target: 5'- gGCCGagaCGGGG-CCgugucCCGaGCGuCCGUCg -3' miRNA: 3'- aCGGUg--GUCCCuGGa----GGC-CGC-GGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 1151 | 0.66 | 0.667618 |
Target: 5'- cUGCCGuccCCGGGaGCCa-CGGCGCCGcCu -3' miRNA: 3'- -ACGGU---GGUCCcUGGagGCCGCGGCaG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 72304 | 0.66 | 0.667618 |
Target: 5'- gGCCGCCA---GCCUgCUGGCgucGCCGUCc -3' miRNA: 3'- aCGGUGGUcccUGGA-GGCCG---CGGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 31070 | 0.66 | 0.658199 |
Target: 5'- cUGCCAgCCGGua--CUCCGGCuGCCGUg -3' miRNA: 3'- -ACGGU-GGUCccugGAGGCCG-CGGCAg -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 209804 | 0.66 | 0.658199 |
Target: 5'- -aCCACCAcgaacGcGuCCUcgCCGGCGCCGUCg -3' miRNA: 3'- acGGUGGUc----C-CuGGA--GGCCGCGGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 28328 | 0.66 | 0.658199 |
Target: 5'- cGCgGCCuGcGGACCgCCGGUgGCCGa- -3' miRNA: 3'- aCGgUGGuC-CCUGGaGGCCG-CGGCag -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 127029 | 0.66 | 0.658199 |
Target: 5'- cGCCGCCGcGGuGCCcgucgcgCUGGCcgucGCCGUCg -3' miRNA: 3'- aCGGUGGU-CCcUGGa------GGCCG----CGGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 35062 | 0.66 | 0.648762 |
Target: 5'- cGCCACCAcacaGGucuuCCUCCGGgCGCuCGa- -3' miRNA: 3'- aCGGUGGUc---CCu---GGAGGCC-GCG-GCag -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 207846 | 0.66 | 0.648762 |
Target: 5'- -uCCGCCAGGGcucCUUCUGGUuCCGUUg -3' miRNA: 3'- acGGUGGUCCCu--GGAGGCCGcGGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 132542 | 0.66 | 0.648762 |
Target: 5'- cGCCACCAccGcCCUCgGuGcCGCCGUCu -3' miRNA: 3'- aCGGUGGUccCuGGAGgC-C-GCGGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 133329 | 0.66 | 0.648762 |
Target: 5'- gGCCgaagACCAGuGugCUCUgGGCGCCGg- -3' miRNA: 3'- aCGG----UGGUCcCugGAGG-CCGCGGCag -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 113791 | 0.66 | 0.648762 |
Target: 5'- gGCCAgCGcgacGGGcACCgcggCGGCGUCGUCg -3' miRNA: 3'- aCGGUgGU----CCC-UGGag--GCCGCGGCAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 130106 | 0.66 | 0.647818 |
Target: 5'- -uCCACCcGGGACCUgCCGucguaccGCGCCuUCg -3' miRNA: 3'- acGGUGGuCCCUGGA-GGC-------CGCGGcAG- -5' |
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14201 | 5' | -64 | NC_003521.1 | + | 88959 | 0.66 | 0.639315 |
Target: 5'- cGCCGCCAGa-ACCUCUcGCGUcuCGUCg -3' miRNA: 3'- aCGGUGGUCccUGGAGGcCGCG--GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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