miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14203 3' -59.2 NC_003521.1 + 192969 0.66 0.888006
Target:  5'- aGCAuguUCUCgGCCACGGCGGGcacGCUc -3'
miRNA:   3'- -UGU---GGAGgUGGUGCCGCCCuucUGGu -5'
14203 3' -59.2 NC_003521.1 + 131750 0.66 0.888006
Target:  5'- gUACCUgCACgACGGCGaGGAcGugCu -3'
miRNA:   3'- uGUGGAgGUGgUGCCGC-CCUuCugGu -5'
14203 3' -59.2 NC_003521.1 + 168426 0.66 0.888006
Target:  5'- -uGCCUCCGCCGCuGGUGaucgacGAGGACg- -3'
miRNA:   3'- ugUGGAGGUGGUG-CCGCc-----CUUCUGgu -5'
14203 3' -59.2 NC_003521.1 + 140112 0.66 0.888006
Target:  5'- cCGCCUCCuccaucagcgGCCGCGGCGGc---GCCu -3'
miRNA:   3'- uGUGGAGG----------UGGUGCCGCCcuucUGGu -5'
14203 3' -59.2 NC_003521.1 + 129579 0.66 0.888006
Target:  5'- gGCugCUCCGCCGCGcCGcGccGGCCGc -3'
miRNA:   3'- -UGugGAGGUGGUGCcGCcCuuCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 19177 0.66 0.888006
Target:  5'- -gGCCUggcuaCACCGCgGGCGGcGAgcuaAGGCCAu -3'
miRNA:   3'- ugUGGAg----GUGGUG-CCGCC-CU----UCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 109261 0.66 0.888006
Target:  5'- gGCuCUggcCCACCACcGUGGuGGAGACCGg -3'
miRNA:   3'- -UGuGGa--GGUGGUGcCGCC-CUUCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 228896 0.66 0.888006
Target:  5'- aGCACCagCCggGCC-CGGCuGGggGACUc -3'
miRNA:   3'- -UGUGGa-GG--UGGuGCCGcCCuuCUGGu -5'
14203 3' -59.2 NC_003521.1 + 29662 0.66 0.887356
Target:  5'- gGCGCCUCCgaaaaacACCAUgGGCGacuGGAGGAUg- -3'
miRNA:   3'- -UGUGGAGG-------UGGUG-CCGC---CCUUCUGgu -5'
14203 3' -59.2 NC_003521.1 + 4732 0.66 0.886051
Target:  5'- gUACCUCUaACCGCGGUguguaaaacggcagGGGAaacgGGAUCAg -3'
miRNA:   3'- uGUGGAGG-UGGUGCCG--------------CCCU----UCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 129290 0.66 0.883417
Target:  5'- gGCGCCggcgguacuuuuugaGCgGCGGCGGGAAGAggucgcCCAg -3'
miRNA:   3'- -UGUGGagg------------UGgUGCCGCCCUUCU------GGU- -5'
14203 3' -59.2 NC_003521.1 + 116712 0.66 0.881421
Target:  5'- aGCGCCgUCCAcuuCCACGGCGGucccGGAGucggcGCCc -3'
miRNA:   3'- -UGUGG-AGGU---GGUGCCGCC----CUUC-----UGGu -5'
14203 3' -59.2 NC_003521.1 + 8 0.66 0.881421
Target:  5'- -gGCCUCCGCUGCGGguccCGGGggGu--- -3'
miRNA:   3'- ugUGGAGGUGGUGCC----GCCCuuCuggu -5'
14203 3' -59.2 NC_003521.1 + 187955 0.66 0.881421
Target:  5'- uACGaCggaCugCACGGCuGGAAGACCGa -3'
miRNA:   3'- -UGUgGag-GugGUGCCGcCCUUCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 69765 0.66 0.881421
Target:  5'- cGCACUgacggcaUACCACGGCgacgaGGGAGcGGCCGu -3'
miRNA:   3'- -UGUGGag-----GUGGUGCCG-----CCCUU-CUGGU- -5'
14203 3' -59.2 NC_003521.1 + 240557 0.66 0.881421
Target:  5'- -gGCCUCCGCUGCGGguccCGGGggGu--- -3'
miRNA:   3'- ugUGGAGGUGGUGCC----GCCCuuCuggu -5'
14203 3' -59.2 NC_003521.1 + 189637 0.66 0.88142
Target:  5'- cACACCgacaUCguCCACGuauCGGGAcuGGACCAa -3'
miRNA:   3'- -UGUGG----AGguGGUGCc--GCCCU--UCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 172534 0.66 0.88142
Target:  5'- --uUCUCCACCGucaGGCGGG-GGAUCu -3'
miRNA:   3'- uguGGAGGUGGUg--CCGCCCuUCUGGu -5'
14203 3' -59.2 NC_003521.1 + 96703 0.66 0.88142
Target:  5'- cGCACCUCguccagGCCGCGGCGGuccAGcaGCCGc -3'
miRNA:   3'- -UGUGGAGg-----UGGUGCCGCCcu-UC--UGGU- -5'
14203 3' -59.2 NC_003521.1 + 31238 0.66 0.88142
Target:  5'- uUACCUCCGCUACGuGCGcccccGGACCc -3'
miRNA:   3'- uGUGGAGGUGGUGC-CGCccu--UCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.