miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14203 3' -59.2 NC_003521.1 + 164055 0.66 0.853121
Target:  5'- -gGCCUCgGCCACGGCGacggucgccucGGAGG-UCGu -3'
miRNA:   3'- ugUGGAGgUGGUGCCGC-----------CCUUCuGGU- -5'
14203 3' -59.2 NC_003521.1 + 69765 0.66 0.881421
Target:  5'- cGCACUgacggcaUACCACGGCgacgaGGGAGcGGCCGu -3'
miRNA:   3'- -UGUGGag-----GUGGUGCCG-----CCCUU-CUGGU- -5'
14203 3' -59.2 NC_003521.1 + 128800 0.66 0.874635
Target:  5'- -gGCCUCCACCA-GGCGcGuGAGGAa-- -3'
miRNA:   3'- ugUGGAGGUGGUgCCGC-C-CUUCUggu -5'
14203 3' -59.2 NC_003521.1 + 134054 0.66 0.853121
Target:  5'- cACGCCUggguuucgaCCGCCugGGCGcccuggacgcGGAGGuguCCAu -3'
miRNA:   3'- -UGUGGA---------GGUGGugCCGC----------CCUUCu--GGU- -5'
14203 3' -59.2 NC_003521.1 + 131061 0.66 0.867653
Target:  5'- -gGCCUCUggaCGCGGUGGcGgcGACCGc -3'
miRNA:   3'- ugUGGAGGug-GUGCCGCC-CuuCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 200989 0.66 0.86048
Target:  5'- cACGCCggaggCCaagcaggcGCCAuCGGC-GGAGGACCGc -3'
miRNA:   3'- -UGUGGa----GG--------UGGU-GCCGcCCUUCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 85590 0.66 0.866945
Target:  5'- cCACCaCCACCACGGacuccaccgaGGGcgcgaagAGGGCCGa -3'
miRNA:   3'- uGUGGaGGUGGUGCCg---------CCC-------UUCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 168426 0.66 0.888006
Target:  5'- -uGCCUCCGCCGCuGGUGaucgacGAGGACg- -3'
miRNA:   3'- ugUGGAGGUGGUG-CCGCc-----CUUCUGgu -5'
14203 3' -59.2 NC_003521.1 + 201905 0.66 0.86048
Target:  5'- cUACUgCCGCCACgacacagaGGCGGGGAcGCCGc -3'
miRNA:   3'- uGUGGaGGUGGUG--------CCGCCCUUcUGGU- -5'
14203 3' -59.2 NC_003521.1 + 187955 0.66 0.881421
Target:  5'- uACGaCggaCugCACGGCuGGAAGACCGa -3'
miRNA:   3'- -UGUgGag-GugGUGCCGcCCUUCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 232870 0.66 0.874635
Target:  5'- -gGCCgcgaCACCGCGGCGaucuGGAGGAUgAg -3'
miRNA:   3'- ugUGGag--GUGGUGCCGC----CCUUCUGgU- -5'
14203 3' -59.2 NC_003521.1 + 129527 0.66 0.86048
Target:  5'- aGCGCCgaccaguucUCCAUCGCGGCGGcGcuGGCaCGg -3'
miRNA:   3'- -UGUGG---------AGGUGGUGCCGCC-CuuCUG-GU- -5'
14203 3' -59.2 NC_003521.1 + 65712 0.66 0.874635
Target:  5'- gACAgCggCGCCGCGGCGGcccuGGCCGg -3'
miRNA:   3'- -UGUgGagGUGGUGCCGCCcuu-CUGGU- -5'
14203 3' -59.2 NC_003521.1 + 121013 0.66 0.853121
Target:  5'- cGCugCUCCagACCuccuCGGCGGcGccGACCu -3'
miRNA:   3'- -UGugGAGG--UGGu---GCCGCC-CuuCUGGu -5'
14203 3' -59.2 NC_003521.1 + 100705 0.66 0.874635
Target:  5'- gGCGCCgccgCgGCCGCugauggaggaGGCGGGggGuuCAu -3'
miRNA:   3'- -UGUGGa---GgUGGUG----------CCGCCCuuCugGU- -5'
14203 3' -59.2 NC_003521.1 + 153067 0.66 0.86048
Target:  5'- gGCcuCCUCCGCCGC--CGGGGcccGGGCCGg -3'
miRNA:   3'- -UGu-GGAGGUGGUGccGCCCU---UCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 35375 0.66 0.853121
Target:  5'- gACGCCgagUCCcCCuCGGCGaGGAcgcGGGCCGc -3'
miRNA:   3'- -UGUGG---AGGuGGuGCCGC-CCU---UCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 42055 0.66 0.867653
Target:  5'- cCACCUCgC-CCACGaGCGGcgcGACCAg -3'
miRNA:   3'- uGUGGAG-GuGGUGC-CGCCcuuCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 216127 0.66 0.874635
Target:  5'- gGCGCggagGCCGCGGCaGaGGAAGGCCAc -3'
miRNA:   3'- -UGUGgaggUGGUGCCG-C-CCUUCUGGU- -5'
14203 3' -59.2 NC_003521.1 + 115132 0.66 0.867653
Target:  5'- gGCGUCUCCACUACGuCGGacAAGGCCAc -3'
miRNA:   3'- -UGUGGAGGUGGUGCcGCCc-UUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.