miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14203 5' -49.2 NC_003521.1 + 168750 0.66 0.999708
Target:  5'- cGCGGUugcgGGUcgGACGcGAUGGAGAu -3'
miRNA:   3'- aCGUCAuaa-UCG--UUGCaCUGCCUCUu -5'
14203 5' -49.2 NC_003521.1 + 49883 0.66 0.999708
Target:  5'- gGCGGUcgUGGCGuGCGUGugGcGAc-- -3'
miRNA:   3'- aCGUCAuaAUCGU-UGCACugC-CUcuu -5'
14203 5' -49.2 NC_003521.1 + 215373 0.66 0.999708
Target:  5'- cGCAGUAgaGGCAGag-GACGGccaGGAAg -3'
miRNA:   3'- aCGUCAUaaUCGUUgcaCUGCC---UCUU- -5'
14203 5' -49.2 NC_003521.1 + 78589 0.66 0.999708
Target:  5'- aGCGGUG--AGCGucGCGggaaGCGGAGAGg -3'
miRNA:   3'- aCGUCAUaaUCGU--UGCac--UGCCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 197259 0.66 0.999708
Target:  5'- aGCGGUGcUUGacGCGGCGccggcGGCGGGGAGc -3'
miRNA:   3'- aCGUCAU-AAU--CGUUGCa----CUGCCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 238081 0.66 0.999687
Target:  5'- uUGCAGUAgcAGCAGCcagccagcgaggcgGUGACGGc--- -3'
miRNA:   3'- -ACGUCAUaaUCGUUG--------------CACUGCCucuu -5'
14203 5' -49.2 NC_003521.1 + 123168 0.66 0.999632
Target:  5'- cUGCuGaggUGGCGGCGgcGGCGGGGGAc -3'
miRNA:   3'- -ACGuCauaAUCGUUGCa-CUGCCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 70308 0.66 0.999632
Target:  5'- gUGCAGgucgcccAGCAGCGaGGCGGuGAc -3'
miRNA:   3'- -ACGUCauaa---UCGUUGCaCUGCCuCUu -5'
14203 5' -49.2 NC_003521.1 + 67127 0.66 0.999632
Target:  5'- aGCAGcaacAGCAGCGggccgcacagGACGGGGGc -3'
miRNA:   3'- aCGUCauaaUCGUUGCa---------CUGCCUCUu -5'
14203 5' -49.2 NC_003521.1 + 98641 0.66 0.999632
Target:  5'- gGCGGcggUAGCGGCGUcgacGACGGcGAGc -3'
miRNA:   3'- aCGUCauaAUCGUUGCA----CUGCCuCUU- -5'
14203 5' -49.2 NC_003521.1 + 204724 0.66 0.99954
Target:  5'- gGCGGggagggUGGCgaggGugGUGAUGGAGGc -3'
miRNA:   3'- aCGUCaua---AUCG----UugCACUGCCUCUu -5'
14203 5' -49.2 NC_003521.1 + 218683 0.66 0.999427
Target:  5'- -cCGGUAagagGGCGGCGgcgaaGGCGGAGGAg -3'
miRNA:   3'- acGUCAUaa--UCGUUGCa----CUGCCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 214184 0.66 0.999427
Target:  5'- gGCAGUucggUGGCAACGUGcCGcacguccugaaaGAGGAc -3'
miRNA:   3'- aCGUCAua--AUCGUUGCACuGC------------CUCUU- -5'
14203 5' -49.2 NC_003521.1 + 157043 0.66 0.999427
Target:  5'- cGCGGUcggAGgAGCGcGGCGGGGGg -3'
miRNA:   3'- aCGUCAuaaUCgUUGCaCUGCCUCUu -5'
14203 5' -49.2 NC_003521.1 + 165975 0.66 0.999427
Target:  5'- gUGCAGgucguGCAGCGUGagGCGcGGGAc -3'
miRNA:   3'- -ACGUCauaauCGUUGCAC--UGC-CUCUu -5'
14203 5' -49.2 NC_003521.1 + 6484 0.66 0.999415
Target:  5'- gGCAGguccGGCAGCGgaggcggUGACGGcAGAGg -3'
miRNA:   3'- aCGUCauaaUCGUUGC-------ACUGCC-UCUU- -5'
14203 5' -49.2 NC_003521.1 + 123697 0.66 0.999292
Target:  5'- gGCGGUGgaagaggaGGCGGCGgcugagcGGCGGAGGc -3'
miRNA:   3'- aCGUCAUaa------UCGUUGCa------CUGCCUCUu -5'
14203 5' -49.2 NC_003521.1 + 139132 0.67 0.99913
Target:  5'- uUGCAGgccaAGCAggACGUGugGGAu-- -3'
miRNA:   3'- -ACGUCauaaUCGU--UGCACugCCUcuu -5'
14203 5' -49.2 NC_003521.1 + 128143 0.67 0.99913
Target:  5'- aGCAGg---AGCuccuGCGaGAUGGAGAAg -3'
miRNA:   3'- aCGUCauaaUCGu---UGCaCUGCCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 53423 0.67 0.99913
Target:  5'- gGCAGguc-GGCAAgGUG-CGGAGGc -3'
miRNA:   3'- aCGUCauaaUCGUUgCACuGCCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.