miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14203 5' -49.2 NC_003521.1 + 215373 0.66 0.999708
Target:  5'- cGCAGUAgaGGCAGag-GACGGccaGGAAg -3'
miRNA:   3'- aCGUCAUaaUCGUUgcaCUGCC---UCUU- -5'
14203 5' -49.2 NC_003521.1 + 180867 0.67 0.998127
Target:  5'- gGCGGgcguugUGGCGAUa-GACGGAGAAg -3'
miRNA:   3'- aCGUCaua---AUCGUUGcaCUGCCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 5514 0.67 0.998938
Target:  5'- gGCAGgagUAGCAGCaGcGACGGuGAc -3'
miRNA:   3'- aCGUCauaAUCGUUG-CaCUGCCuCUu -5'
14203 5' -49.2 NC_003521.1 + 139132 0.67 0.99913
Target:  5'- uUGCAGgccaAGCAggACGUGugGGAu-- -3'
miRNA:   3'- -ACGUCauaaUCGU--UGCACugCCUcuu -5'
14203 5' -49.2 NC_003521.1 + 214184 0.66 0.999427
Target:  5'- gGCAGUucggUGGCAACGUGcCGcacguccugaaaGAGGAc -3'
miRNA:   3'- aCGUCAua--AUCGUUGCACuGC------------CUCUU- -5'
14203 5' -49.2 NC_003521.1 + 218683 0.66 0.999427
Target:  5'- -cCGGUAagagGGCGGCGgcgaaGGCGGAGGAg -3'
miRNA:   3'- acGUCAUaa--UCGUUGCa----CUGCCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 67127 0.66 0.999632
Target:  5'- aGCAGcaacAGCAGCGggccgcacagGACGGGGGc -3'
miRNA:   3'- aCGUCauaaUCGUUGCa---------CUGCCUCUu -5'
14203 5' -49.2 NC_003521.1 + 70308 0.66 0.999632
Target:  5'- gUGCAGgucgcccAGCAGCGaGGCGGuGAc -3'
miRNA:   3'- -ACGUCauaa---UCGUUGCaCUGCCuCUu -5'
14203 5' -49.2 NC_003521.1 + 49883 0.66 0.999708
Target:  5'- gGCGGUcgUGGCGuGCGUGugGcGAc-- -3'
miRNA:   3'- aCGUCAuaAUCGU-UGCACugC-CUcuu -5'
14203 5' -49.2 NC_003521.1 + 206439 0.68 0.997762
Target:  5'- cGUGGUG-UAGCGauugACGUgGGCGGGGGAu -3'
miRNA:   3'- aCGUCAUaAUCGU----UGCA-CUGCCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 39947 0.68 0.997338
Target:  5'- aGCAGcuccAGCAGCGUauCGGAGGAa -3'
miRNA:   3'- aCGUCauaaUCGUUGCAcuGCCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 181655 0.68 0.99685
Target:  5'- aGCGG----GGCAugGUGcGCGGGGGAg -3'
miRNA:   3'- aCGUCauaaUCGUugCAC-UGCCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 209558 0.72 0.956971
Target:  5'- cGgGGUGgcGGCGACgGUGGCGGGGGu -3'
miRNA:   3'- aCgUCAUaaUCGUUG-CACUGCCUCUu -5'
14203 5' -49.2 NC_003521.1 + 117004 0.72 0.964294
Target:  5'- aGCAGc--UGGuCGGCGUGACGGAGc- -3'
miRNA:   3'- aCGUCauaAUC-GUUGCACUGCCUCuu -5'
14203 5' -49.2 NC_003521.1 + 48636 0.71 0.969794
Target:  5'- aGCAGcgcgAGCAGCGUGAUgaaaaccuacggggGGAGAAg -3'
miRNA:   3'- aCGUCauaaUCGUUGCACUG--------------CCUCUU- -5'
14203 5' -49.2 NC_003521.1 + 17273 0.71 0.975716
Target:  5'- aGCAGUAUcggcgugucgugGGUAACGUgacgcGACGGAGAc -3'
miRNA:   3'- aCGUCAUAa-----------UCGUUGCA-----CUGCCUCUu -5'
14203 5' -49.2 NC_003521.1 + 47520 0.7 0.984946
Target:  5'- aGCcGUAgcugAGCAGCGUGuccCGGAGGu -3'
miRNA:   3'- aCGuCAUaa--UCGUUGCACu--GCCUCUu -5'
14203 5' -49.2 NC_003521.1 + 61110 0.69 0.994104
Target:  5'- cGCAGcug-AGCGGCGaGACGGuGAAg -3'
miRNA:   3'- aCGUCauaaUCGUUGCaCUGCCuCUU- -5'
14203 5' -49.2 NC_003521.1 + 135793 0.69 0.994926
Target:  5'- cUGCGGgaggAggAGCAGCGgcgGAgGGAGGc -3'
miRNA:   3'- -ACGUCa---UaaUCGUUGCa--CUgCCUCUu -5'
14203 5' -49.2 NC_003521.1 + 20291 0.68 0.995652
Target:  5'- gGCGag---AGgAACGUGACGGAGAc -3'
miRNA:   3'- aCGUcauaaUCgUUGCACUGCCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.