Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14204 | 5' | -56.3 | NC_003521.1 | + | 160730 | 0.66 | 0.956593 |
Target: 5'- aUCGuGGUc-GCgCCGUCGGCaccCCCGAUGa -3' miRNA: 3'- cAGU-CCAuuUG-GGCAGCCG---GGGCUAU- -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 34248 | 0.66 | 0.956593 |
Target: 5'- -cCGGG---GCCUGUCGuGCCCCGu-- -3' miRNA: 3'- caGUCCauuUGGGCAGC-CGGGGCuau -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 78801 | 0.66 | 0.956593 |
Target: 5'- -gCAGGUcGACgaG-CGGCCCUGGUGg -3' miRNA: 3'- caGUCCAuUUGggCaGCCGGGGCUAU- -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 88995 | 0.66 | 0.956593 |
Target: 5'- gGUCAGGUAcagaaAugCCG-CGGgCCCCa--- -3' miRNA: 3'- -CAGUCCAU-----UugGGCaGCC-GGGGcuau -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 223576 | 0.66 | 0.955477 |
Target: 5'- uUCAGGUGAAUacggcgcgccuccaCC-UCGGCCuCCGAg- -3' miRNA: 3'- cAGUCCAUUUG--------------GGcAGCCGG-GGCUau -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 69651 | 0.66 | 0.954342 |
Target: 5'- cGUUGGuGUuGAaaaugacgcucuucuCCUGUCGGUCCCGAUAa -3' miRNA: 3'- -CAGUC-CAuUU---------------GGGCAGCCGGGGCUAU- -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 169526 | 0.66 | 0.939651 |
Target: 5'- -cCAGGUGcuggugccccaggGGCCCGUgccgCGGCCCCc--- -3' miRNA: 3'- caGUCCAU-------------UUGGGCA----GCCGGGGcuau -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 127329 | 0.66 | 0.935433 |
Target: 5'- gGUCAGcGgcuGCCgGUCGGCCaCGAUc -3' miRNA: 3'- -CAGUC-CauuUGGgCAGCCGGgGCUAu -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 144407 | 0.66 | 0.935433 |
Target: 5'- cGUCAGGaAGaaccucgagcGCCUGUUGGCCaCCGcgGa -3' miRNA: 3'- -CAGUCCaUU----------UGGGCAGCCGG-GGCuaU- -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 52630 | 0.66 | 0.935433 |
Target: 5'- -cCGGGUGAuCCugCGUCGGCCCuCGcgGc -3' miRNA: 3'- caGUCCAUUuGG--GCAGCCGGG-GCuaU- -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 23236 | 0.66 | 0.935433 |
Target: 5'- gGUCcgGGGcGGACCCGg-GGUCCUGAUGa -3' miRNA: 3'- -CAG--UCCaUUUGGGCagCCGGGGCUAU- -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 5987 | 0.67 | 0.925404 |
Target: 5'- -aCAGGUGAACuuGcucUCGGCCaCGAa- -3' miRNA: 3'- caGUCCAUUUGggC---AGCCGGgGCUau -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 29362 | 0.67 | 0.925404 |
Target: 5'- -aCGGaGUgcGAACCCG-CGGCCgCGGUAc -3' miRNA: 3'- caGUC-CA--UUUGGGCaGCCGGgGCUAU- -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 124069 | 0.67 | 0.908667 |
Target: 5'- cGUCAGGaUGGugUcguCGUCGGgCCCGAc- -3' miRNA: 3'- -CAGUCC-AUUugG---GCAGCCgGGGCUau -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 126397 | 0.67 | 0.908667 |
Target: 5'- cGUCAGGgcgAAGCCCGgguggaugUgGGCCuuGGUc -3' miRNA: 3'- -CAGUCCa--UUUGGGC--------AgCCGGggCUAu -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 206071 | 0.67 | 0.908667 |
Target: 5'- aUCGGcGUGGucucguacgccGCCUGUCGGUaCCCGGUGu -3' miRNA: 3'- cAGUC-CAUU-----------UGGGCAGCCG-GGGCUAU- -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 128549 | 0.68 | 0.894474 |
Target: 5'- cGUCAGGU-GGCCCuuguaggaguugaaGUCGGCCagGAUGg -3' miRNA: 3'- -CAGUCCAuUUGGG--------------CAGCCGGggCUAU- -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 91938 | 0.68 | 0.869255 |
Target: 5'- ---cGGUGGACCCGgcggCGGaCCCCGu-- -3' miRNA: 3'- caguCCAUUUGGGCa---GCC-GGGGCuau -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 238524 | 0.69 | 0.85446 |
Target: 5'- -gCAGGUgcgaGAGCUCGUCGGCCagCGGg- -3' miRNA: 3'- caGUCCA----UUUGGGCAGCCGGg-GCUau -5' |
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14204 | 5' | -56.3 | NC_003521.1 | + | 38297 | 0.69 | 0.85446 |
Target: 5'- -gCAGGUgcgaGAGCUCGUCGGCCagCGGg- -3' miRNA: 3'- caGUCCA----UUUGGGCAGCCGGg-GCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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