miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14204 5' -56.3 NC_003521.1 + 70898 1.07 0.005708
Target:  5'- cGUCAGGUAAACCCGUCGGCCCCGAUAa -3'
miRNA:   3'- -CAGUCCAUUUGGGCAGCCGGGGCUAU- -5'
14204 5' -56.3 NC_003521.1 + 63046 0.73 0.624572
Target:  5'- -aCAGGc---CCCGUCGGCCCUGGc- -3'
miRNA:   3'- caGUCCauuuGGGCAGCCGGGGCUau -5'
14204 5' -56.3 NC_003521.1 + 17731 0.73 0.634528
Target:  5'- -cCGGGggaGAACCCGUCGGCCgaggCCGGg- -3'
miRNA:   3'- caGUCCa--UUUGGGCAGCCGG----GGCUau -5'
14204 5' -56.3 NC_003521.1 + 66769 0.71 0.742216
Target:  5'- -gCGGGUGAugCCGcCGGCCCaGAc- -3'
miRNA:   3'- caGUCCAUUugGGCaGCCGGGgCUau -5'
14204 5' -56.3 NC_003521.1 + 203778 0.71 0.751627
Target:  5'- aGUCAGGaguAgCUGUCGGCCgCCGAc- -3'
miRNA:   3'- -CAGUCCauuUgGGCAGCCGG-GGCUau -5'
14204 5' -56.3 NC_003521.1 + 227000 0.71 0.760939
Target:  5'- -cCAGGUGcuuUCCGaCGGCCCCGGa- -3'
miRNA:   3'- caGUCCAUuu-GGGCaGCCGGGGCUau -5'
14204 5' -56.3 NC_003521.1 + 112441 0.71 0.770143
Target:  5'- cUCAGGc-GGCCCaggCGGCCCUGGUGg -3'
miRNA:   3'- cAGUCCauUUGGGca-GCCGGGGCUAU- -5'
14204 5' -56.3 NC_003521.1 + 149442 0.71 0.770143
Target:  5'- gGUCGGGgguccGGGCCCGggguUCGGCCCCc--- -3'
miRNA:   3'- -CAGUCCa----UUUGGGC----AGCCGGGGcuau -5'
14204 5' -56.3 NC_003521.1 + 238524 0.69 0.85446
Target:  5'- -gCAGGUgcgaGAGCUCGUCGGCCagCGGg- -3'
miRNA:   3'- caGUCCA----UUUGGGCAGCCGGg-GCUau -5'
14204 5' -56.3 NC_003521.1 + 38297 0.69 0.85446
Target:  5'- -gCAGGUgcgaGAGCUCGUCGGCCagCGGg- -3'
miRNA:   3'- caGUCCA----UUUGGGCAGCCGGg-GCUau -5'
14204 5' -56.3 NC_003521.1 + 91938 0.68 0.869255
Target:  5'- ---cGGUGGACCCGgcggCGGaCCCCGu-- -3'
miRNA:   3'- caguCCAUUUGGGCa---GCC-GGGGCuau -5'
14204 5' -56.3 NC_003521.1 + 128549 0.68 0.894474
Target:  5'- cGUCAGGU-GGCCCuuguaggaguugaaGUCGGCCagGAUGg -3'
miRNA:   3'- -CAGUCCAuUUGGG--------------CAGCCGGggCUAU- -5'
14204 5' -56.3 NC_003521.1 + 206071 0.67 0.908667
Target:  5'- aUCGGcGUGGucucguacgccGCCUGUCGGUaCCCGGUGu -3'
miRNA:   3'- cAGUC-CAUU-----------UGGGCAGCCG-GGGCUAU- -5'
14204 5' -56.3 NC_003521.1 + 124069 0.67 0.908667
Target:  5'- cGUCAGGaUGGugUcguCGUCGGgCCCGAc- -3'
miRNA:   3'- -CAGUCC-AUUugG---GCAGCCgGGGCUau -5'
14204 5' -56.3 NC_003521.1 + 126397 0.67 0.908667
Target:  5'- cGUCAGGgcgAAGCCCGgguggaugUgGGCCuuGGUc -3'
miRNA:   3'- -CAGUCCa--UUUGGGC--------AgCCGGggCUAu -5'
14204 5' -56.3 NC_003521.1 + 5987 0.67 0.925404
Target:  5'- -aCAGGUGAACuuGcucUCGGCCaCGAa- -3'
miRNA:   3'- caGUCCAUUUGggC---AGCCGGgGCUau -5'
14204 5' -56.3 NC_003521.1 + 29362 0.67 0.925404
Target:  5'- -aCGGaGUgcGAACCCG-CGGCCgCGGUAc -3'
miRNA:   3'- caGUC-CA--UUUGGGCaGCCGGgGCUAU- -5'
14204 5' -56.3 NC_003521.1 + 23236 0.66 0.935433
Target:  5'- gGUCcgGGGcGGACCCGg-GGUCCUGAUGa -3'
miRNA:   3'- -CAG--UCCaUUUGGGCagCCGGGGCUAU- -5'
14204 5' -56.3 NC_003521.1 + 144407 0.66 0.935433
Target:  5'- cGUCAGGaAGaaccucgagcGCCUGUUGGCCaCCGcgGa -3'
miRNA:   3'- -CAGUCCaUU----------UGGGCAGCCGG-GGCuaU- -5'
14204 5' -56.3 NC_003521.1 + 127329 0.66 0.935433
Target:  5'- gGUCAGcGgcuGCCgGUCGGCCaCGAUc -3'
miRNA:   3'- -CAGUC-CauuUGGgCAGCCGGgGCUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.