miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14206 5' -57.5 NC_003521.1 + 91105 0.66 0.92458
Target:  5'- -gCGCCuGCGCcGGUCGGgGAUuccccGGCa -3'
miRNA:   3'- uaGCGG-CGCGaUCAGCCgCUGua---CUG- -5'
14206 5' -57.5 NC_003521.1 + 90572 0.66 0.92458
Target:  5'- --gGCCGCGgUGca-GGcCGACGUGACg -3'
miRNA:   3'- uagCGGCGCgAUcagCC-GCUGUACUG- -5'
14206 5' -57.5 NC_003521.1 + 17006 0.66 0.924054
Target:  5'- -gCGcCCGCGgUGG-CGGCGGCGcaggcccgucgucUGGCg -3'
miRNA:   3'- uaGC-GGCGCgAUCaGCCGCUGU-------------ACUG- -5'
14206 5' -57.5 NC_003521.1 + 71397 0.66 0.919211
Target:  5'- cGUCGuCCGCGUgagcgAGgCGGCGGCcccgaaccUGACa -3'
miRNA:   3'- -UAGC-GGCGCGa----UCaGCCGCUGu-------ACUG- -5'
14206 5' -57.5 NC_003521.1 + 168541 0.66 0.919211
Target:  5'- --gGCCaGCGCgg--CGGCGGCGcUGGCg -3'
miRNA:   3'- uagCGG-CGCGaucaGCCGCUGU-ACUG- -5'
14206 5' -57.5 NC_003521.1 + 117488 0.66 0.919211
Target:  5'- -cCGCgGCGCUGgggccGUCGGUGuUcgGACg -3'
miRNA:   3'- uaGCGgCGCGAU-----CAGCCGCuGuaCUG- -5'
14206 5' -57.5 NC_003521.1 + 142236 0.66 0.919211
Target:  5'- cGUCGCUGCGCUcgcGGgcccgcuccuccUCGGCcGACucgGGCu -3'
miRNA:   3'- -UAGCGGCGCGA---UC------------AGCCG-CUGua-CUG- -5'
14206 5' -57.5 NC_003521.1 + 36961 0.66 0.919211
Target:  5'- gGUCGUCGCaGCggagcgGGUgcucggCGGCGACAUccgcGACg -3'
miRNA:   3'- -UAGCGGCG-CGa-----UCA------GCCGCUGUA----CUG- -5'
14206 5' -57.5 NC_003521.1 + 197877 0.66 0.913617
Target:  5'- cUCGCUGgGCUGca-GGCGGCAgcgGAUg -3'
miRNA:   3'- uAGCGGCgCGAUcagCCGCUGUa--CUG- -5'
14206 5' -57.5 NC_003521.1 + 167845 0.66 0.913617
Target:  5'- -cCGCCGCggGCUcGUCGGCuACuUGAUg -3'
miRNA:   3'- uaGCGGCG--CGAuCAGCCGcUGuACUG- -5'
14206 5' -57.5 NC_003521.1 + 142903 0.66 0.913617
Target:  5'- --aGCgGCGCcaucAGcCGGCGACGUcGGCg -3'
miRNA:   3'- uagCGgCGCGa---UCaGCCGCUGUA-CUG- -5'
14206 5' -57.5 NC_003521.1 + 124022 0.66 0.913617
Target:  5'- -gUGCCGCGgUGcGUCaGCGGCugcuUGGCg -3'
miRNA:   3'- uaGCGGCGCgAU-CAGcCGCUGu---ACUG- -5'
14206 5' -57.5 NC_003521.1 + 135734 0.66 0.913617
Target:  5'- cUCGCCGCuGCUacugcGGUggUGGCGGCGguggGAUc -3'
miRNA:   3'- uAGCGGCG-CGA-----UCA--GCCGCUGUa---CUG- -5'
14206 5' -57.5 NC_003521.1 + 155503 0.66 0.913617
Target:  5'- --gGCCGCgggccaagGCUGGagcgaCGGCGACGUGGu -3'
miRNA:   3'- uagCGGCG--------CGAUCa----GCCGCUGUACUg -5'
14206 5' -57.5 NC_003521.1 + 91530 0.66 0.910154
Target:  5'- cGUCGUCGCGCUccagcacguacuuguGGgcgccgacgCGGaaCGACAUGGCc -3'
miRNA:   3'- -UAGCGGCGCGA---------------UCa--------GCC--GCUGUACUG- -5'
14206 5' -57.5 NC_003521.1 + 55213 0.66 0.9078
Target:  5'- -cCGCCGCGCUccGUCGGCGuuuaAU-ACa -3'
miRNA:   3'- uaGCGGCGCGAu-CAGCCGCug--UAcUG- -5'
14206 5' -57.5 NC_003521.1 + 61906 0.66 0.9078
Target:  5'- cGUCGCCGUcaucgUGGUCGGCGuuCAcGGCg -3'
miRNA:   3'- -UAGCGGCGcg---AUCAGCCGCu-GUaCUG- -5'
14206 5' -57.5 NC_003521.1 + 50469 0.66 0.9078
Target:  5'- --aGCCGCGU--GUCGGUGACAcGuCg -3'
miRNA:   3'- uagCGGCGCGauCAGCCGCUGUaCuG- -5'
14206 5' -57.5 NC_003521.1 + 137604 0.66 0.9078
Target:  5'- -cCGCCGC-CUGGcCGGCGACc---- -3'
miRNA:   3'- uaGCGGCGcGAUCaGCCGCUGuacug -5'
14206 5' -57.5 NC_003521.1 + 76490 0.66 0.9078
Target:  5'- uGUCGCCGggaCGCg---UGGCGGCuGUGACu -3'
miRNA:   3'- -UAGCGGC---GCGaucaGCCGCUG-UACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.