miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14206 5' -57.5 NC_003521.1 + 1031 0.67 0.881667
Target:  5'- -aCGCCGCGCagccagaUGGcCGGCGuCggGGCc -3'
miRNA:   3'- uaGCGGCGCG-------AUCaGCCGCuGuaCUG- -5'
14206 5' -57.5 NC_003521.1 + 1293 0.7 0.703183
Target:  5'- -aCGCCGacgaaugguucCGCUAcggcGcCGGCGACGUGGCg -3'
miRNA:   3'- uaGCGGC-----------GCGAU----CaGCCGCUGUACUG- -5'
14206 5' -57.5 NC_003521.1 + 4661 0.68 0.829983
Target:  5'- cAUCGUC-CGCUAGgucccgcCGGCGACGUcGCg -3'
miRNA:   3'- -UAGCGGcGCGAUCa------GCCGCUGUAcUG- -5'
14206 5' -57.5 NC_003521.1 + 6393 0.67 0.868355
Target:  5'- -gCGCCGCaGCUAccgCGGCGGC--GACg -3'
miRNA:   3'- uaGCGGCG-CGAUca-GCCGCUGuaCUG- -5'
14206 5' -57.5 NC_003521.1 + 12124 0.68 0.845884
Target:  5'- -cCGCCGCGCUccuucgGGUgCGGCGGCcuuaauaaaguGUGGa -3'
miRNA:   3'- uaGCGGCGCGA------UCA-GCCGCUG-----------UACUg -5'
14206 5' -57.5 NC_003521.1 + 15515 0.68 0.821775
Target:  5'- -gCGCuCGgGUUGG-CGGCGGCAugUGGCg -3'
miRNA:   3'- uaGCG-GCgCGAUCaGCCGCUGU--ACUG- -5'
14206 5' -57.5 NC_003521.1 + 17006 0.66 0.924054
Target:  5'- -gCGcCCGCGgUGG-CGGCGGCGcaggcccgucgucUGGCg -3'
miRNA:   3'- uaGC-GGCGCgAUCaGCCGCUGU-------------ACUG- -5'
14206 5' -57.5 NC_003521.1 + 17796 0.69 0.76939
Target:  5'- cGUCGgCGUGCUGGcCGuGCGACcggcgGACg -3'
miRNA:   3'- -UAGCgGCGCGAUCaGC-CGCUGua---CUG- -5'
14206 5' -57.5 NC_003521.1 + 18720 0.72 0.604463
Target:  5'- uGUgGCUGcCGCUGGcggCGGCGAuCGUGGCg -3'
miRNA:   3'- -UAgCGGC-GCGAUCa--GCCGCU-GUACUG- -5'
14206 5' -57.5 NC_003521.1 + 19961 0.74 0.498128
Target:  5'- gGUgGCCGgGCUGG-CGGUGAuCGUGACc -3'
miRNA:   3'- -UAgCGGCgCGAUCaGCCGCU-GUACUG- -5'
14206 5' -57.5 NC_003521.1 + 20643 0.71 0.663927
Target:  5'- --aGCCGCGCgcUGGUgGGCGccuACGUGAUg -3'
miRNA:   3'- uagCGGCGCG--AUCAgCCGC---UGUACUG- -5'
14206 5' -57.5 NC_003521.1 + 22399 0.67 0.888374
Target:  5'- -gUGCCGcCGCU-GUCGcuggccaugcugcGCGGCGUGGCc -3'
miRNA:   3'- uaGCGGC-GCGAuCAGC-------------CGCUGUACUG- -5'
14206 5' -57.5 NC_003521.1 + 26013 0.68 0.821775
Target:  5'- cGUCGCCGCGCc---CGGCG-CccGACg -3'
miRNA:   3'- -UAGCGGCGCGaucaGCCGCuGuaCUG- -5'
14206 5' -57.5 NC_003521.1 + 34069 0.67 0.868355
Target:  5'- aAUCGgCGa--UAGUCGGCGGCAgucGGCg -3'
miRNA:   3'- -UAGCgGCgcgAUCAGCCGCUGUa--CUG- -5'
14206 5' -57.5 NC_003521.1 + 35883 0.67 0.875453
Target:  5'- uUCGUcuCGCGCUGGcCGGUGcCAcGGCa -3'
miRNA:   3'- uAGCG--GCGCGAUCaGCCGCuGUaCUG- -5'
14206 5' -57.5 NC_003521.1 + 36956 0.67 0.861057
Target:  5'- --aGCCGaGCUGccCGGCGAaCAUGACg -3'
miRNA:   3'- uagCGGCgCGAUcaGCCGCU-GUACUG- -5'
14206 5' -57.5 NC_003521.1 + 36961 0.66 0.919211
Target:  5'- gGUCGUCGCaGCggagcgGGUgcucggCGGCGACAUccgcGACg -3'
miRNA:   3'- -UAGCGGCG-CGa-----UCA------GCCGCUGUA----CUG- -5'
14206 5' -57.5 NC_003521.1 + 37120 0.67 0.861057
Target:  5'- -cUGCCGuCGCUAc-UGGCGgACGUGACg -3'
miRNA:   3'- uaGCGGC-GCGAUcaGCCGC-UGUACUG- -5'
14206 5' -57.5 NC_003521.1 + 37361 0.73 0.545672
Target:  5'- -cCGCCGgGaCUGGUCGGCGACu--GCg -3'
miRNA:   3'- uaGCGGCgC-GAUCAGCCGCUGuacUG- -5'
14206 5' -57.5 NC_003521.1 + 38446 0.71 0.693433
Target:  5'- aGUUGCUGCuGCUggagcaGGUCGGCGGCcguggGACg -3'
miRNA:   3'- -UAGCGGCG-CGA------UCAGCCGCUGua---CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.