miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14207 5' -57.9 NC_003521.1 + 92035 0.66 0.927354
Target:  5'- -cGGUGGGuCCGGGGGUccc-CGGGGu -3'
miRNA:   3'- gaCCACCU-GGCCCUCGucuuGCUCCu -5'
14207 5' -57.9 NC_003521.1 + 162983 0.66 0.927354
Target:  5'- gUGGUGGGCaCGGGuGGCcccAACGAGa- -3'
miRNA:   3'- gACCACCUG-GCCC-UCGuc-UUGCUCcu -5'
14207 5' -57.9 NC_003521.1 + 177989 0.66 0.926847
Target:  5'- cCUGGggcGGugCGGGuagggcgGGUAGGACgGAGGc -3'
miRNA:   3'- -GACCa--CCugGCCC-------UCGUCUUG-CUCCu -5'
14207 5' -57.9 NC_003521.1 + 169171 0.66 0.925826
Target:  5'- aUGuUGGAguacaugacaugacCCGGGAGguGGACGGGcGGg -3'
miRNA:   3'- gACcACCU--------------GGCCCUCguCUUGCUC-CU- -5'
14207 5' -57.9 NC_003521.1 + 178850 0.66 0.925826
Target:  5'- -cGG-GGGCgacgggaaagucagCGGGcAGUAGAGCGAGGc -3'
miRNA:   3'- gaCCaCCUG--------------GCCC-UCGUCUUGCUCCu -5'
14207 5' -57.9 NC_003521.1 + 35542 0.66 0.922183
Target:  5'- gUGGagGGAUCGGGAuCAuGAACG-GGAu -3'
miRNA:   3'- gACCa-CCUGGCCCUcGU-CUUGCuCCU- -5'
14207 5' -57.9 NC_003521.1 + 172995 0.66 0.922183
Target:  5'- uCUGGgucgcgGGGCUcacuugagGGGAGCAGccgcgaGAgGAGGAg -3'
miRNA:   3'- -GACCa-----CCUGG--------CCCUCGUC------UUgCUCCU- -5'
14207 5' -57.9 NC_003521.1 + 212267 0.66 0.922183
Target:  5'- -cGGUGG-CCGGcGGUAGGuaGAGGAu -3'
miRNA:   3'- gaCCACCuGGCCcUCGUCUugCUCCU- -5'
14207 5' -57.9 NC_003521.1 + 7728 0.66 0.922183
Target:  5'- -gGGUGGGgaGGGcGGCGcGAGCGGcGGAg -3'
miRNA:   3'- gaCCACCUggCCC-UCGU-CUUGCU-CCU- -5'
14207 5' -57.9 NC_003521.1 + 172552 0.66 0.921654
Target:  5'- cCUGGUGGauGCUGGGgauguugaagGGCAGGuucuuguacuccaGCGAGcGAg -3'
miRNA:   3'- -GACCACC--UGGCCC----------UCGUCU-------------UGCUC-CU- -5'
14207 5' -57.9 NC_003521.1 + 230159 0.66 0.916794
Target:  5'- -aGuUGGACCccaGGuGGUAGAACGGGGAc -3'
miRNA:   3'- gaCcACCUGG---CCcUCGUCUUGCUCCU- -5'
14207 5' -57.9 NC_003521.1 + 87117 0.66 0.916794
Target:  5'- gCUGGUGGACgCGcgucccaaGGAGC---GCGAGGu -3'
miRNA:   3'- -GACCACCUG-GC--------CCUCGucuUGCUCCu -5'
14207 5' -57.9 NC_003521.1 + 64368 0.66 0.916794
Target:  5'- cCUGGacaugcccgaGGugCGGGcgcgucuGCAGAACGuGGAg -3'
miRNA:   3'- -GACCa---------CCugGCCCu------CGUCUUGCuCCU- -5'
14207 5' -57.9 NC_003521.1 + 80315 0.66 0.916794
Target:  5'- -cGGUGGugCuGGAGCuGcGCGAcuGGAu -3'
miRNA:   3'- gaCCACCugGcCCUCGuCuUGCU--CCU- -5'
14207 5' -57.9 NC_003521.1 + 98818 0.66 0.916794
Target:  5'- -gGGUacGGCCGGGAucugaGguGAcgGCGAGGAg -3'
miRNA:   3'- gaCCAc-CUGGCCCU-----CguCU--UGCUCCU- -5'
14207 5' -57.9 NC_003521.1 + 170191 0.66 0.916794
Target:  5'- -cGGUGGuGCCGGuGgaGGUAGuggcACGAGGGg -3'
miRNA:   3'- gaCCACC-UGGCC-C--UCGUCu---UGCUCCU- -5'
14207 5' -57.9 NC_003521.1 + 234043 0.66 0.916794
Target:  5'- uCUGGUGGACCGGcauGGUAcuccuggccauGGACGcccuGGGAc -3'
miRNA:   3'- -GACCACCUGGCCc--UCGU-----------CUUGC----UCCU- -5'
14207 5' -57.9 NC_003521.1 + 126698 0.66 0.916243
Target:  5'- aUGGaGGcgaacauGCCGGuGAGCAGAucCGAGGc -3'
miRNA:   3'- gACCaCC-------UGGCC-CUCGUCUu-GCUCCu -5'
14207 5' -57.9 NC_003521.1 + 78176 0.66 0.911188
Target:  5'- cCUGGUGGcGCCGauaGAGCguGGGACugugGAGGAa -3'
miRNA:   3'- -GACCACC-UGGCc--CUCG--UCUUG----CUCCU- -5'
14207 5' -57.9 NC_003521.1 + 164063 0.66 0.911188
Target:  5'- gUGGUGGA--GGaGGGgAGAACGGGGu -3'
miRNA:   3'- gACCACCUggCC-CUCgUCUUGCUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.