miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1421 5' -56 NC_001335.1 + 51713 0.66 0.641793
Target:  5'- -aGGGCUUGACAGCCacccGGCcaGUaGUGCa -3'
miRNA:   3'- ucUCCGAGCUGUUGGa---CCG--CGaCAUG- -5'
1421 5' -56 NC_001335.1 + 36202 0.66 0.641793
Target:  5'- -cAGGUaCGGCAGCUUGGUgGCUGUc- -3'
miRNA:   3'- ucUCCGaGCUGUUGGACCG-CGACAug -5'
1421 5' -56 NC_001335.1 + 4680 0.66 0.630673
Target:  5'- cGAGGgugUCGACugacugcucuGGCCUGGUGCUGcagACc -3'
miRNA:   3'- uCUCCg--AGCUG----------UUGGACCGCGACa--UG- -5'
1421 5' -56 NC_001335.1 + 36446 0.66 0.619554
Target:  5'- uGuGGCUUGAUGcCCUGGCGgUGg-- -3'
miRNA:   3'- uCuCCGAGCUGUuGGACCGCgACaug -5'
1421 5' -56 NC_001335.1 + 42987 0.66 0.608446
Target:  5'- cAGAGGCUCGAagucacCAGCCUGGauccgaGCc---- -3'
miRNA:   3'- -UCUCCGAGCU------GUUGGACCg-----CGacaug -5'
1421 5' -56 NC_001335.1 + 34157 0.66 0.608446
Target:  5'- cGAGGUUgaCGACGAguUCUGGCGuCUGgcCa -3'
miRNA:   3'- uCUCCGA--GCUGUU--GGACCGC-GACauG- -5'
1421 5' -56 NC_001335.1 + 23315 0.67 0.553402
Target:  5'- cGGAGGCaccggagcuUCGACAGCUUcGGCaGCccGUACc -3'
miRNA:   3'- -UCUCCG---------AGCUGUUGGA-CCG-CGa-CAUG- -5'
1421 5' -56 NC_001335.1 + 36491 0.69 0.458861
Target:  5'- -uGGGCUacggCGGCAACCagaaGGUGCUGUGg -3'
miRNA:   3'- ucUCCGA----GCUGUUGGa---CCGCGACAUg -5'
1421 5' -56 NC_001335.1 + 4395 0.71 0.364835
Target:  5'- -cAGGUUCGACu-CCUGGCG-UGUAUg -3'
miRNA:   3'- ucUCCGAGCUGuuGGACCGCgACAUG- -5'
1421 5' -56 NC_001335.1 + 22098 0.71 0.331137
Target:  5'- aGGAGcaUUCGACAcggucACC-GGCGCUGUGCa -3'
miRNA:   3'- -UCUCc-GAGCUGU-----UGGaCCGCGACAUG- -5'
1421 5' -56 NC_001335.1 + 46326 0.72 0.315166
Target:  5'- cGAGGCUUGACGuuCUUGGUGCgagGaUGCg -3'
miRNA:   3'- uCUCCGAGCUGUu-GGACCGCGa--C-AUG- -5'
1421 5' -56 NC_001335.1 + 32918 0.73 0.270779
Target:  5'- cGAcGGUgaCGACGGCCUcGGCuGCUGUGCg -3'
miRNA:   3'- uCU-CCGa-GCUGUUGGA-CCG-CGACAUG- -5'
1421 5' -56 NC_001335.1 + 8699 0.82 0.065343
Target:  5'- cGAGGCggaaacccUCGACGGCCUGGCGCUcgGCg -3'
miRNA:   3'- uCUCCG--------AGCUGUUGGACCGCGAcaUG- -5'
1421 5' -56 NC_001335.1 + 49928 1.09 0.000662
Target:  5'- cAGAGGCUCGACAACCUGGCGCUGUACu -3'
miRNA:   3'- -UCUCCGAGCUGUUGGACCGCGACAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.