Results 41 - 60 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 98462 | 0.67 | 0.969314 |
Target: 5'- -----aGAGGAgGAGGUaGUCGUAGUg -3' miRNA: 3'- agucuaCUCCUgCUCCGcUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 71972 | 0.67 | 0.963098 |
Target: 5'- gCAGAUGAGcccGGCGuccGUGAcgCGCAGCu -3' miRNA: 3'- aGUCUACUC---CUGCuc-CGCUa-GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 115928 | 0.67 | 0.963098 |
Target: 5'- -gAGGUGAGGccaguacgguUGGGGCGucUUGCGGCu -3' miRNA: 3'- agUCUACUCCu---------GCUCCGCu-AGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 163735 | 0.67 | 0.963098 |
Target: 5'- -gGGAUGAGcGGCGccGGCGGcaacaGCGGCg -3' miRNA: 3'- agUCUACUC-CUGCu-CCGCUag---CGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 193280 | 0.67 | 0.963098 |
Target: 5'- gCGGGUGccGGGACG-GGCG-UCGgAGUc -3' miRNA: 3'- aGUCUAC--UCCUGCuCCGCuAGCgUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 216823 | 0.67 | 0.963098 |
Target: 5'- cCGGAUG-GcGCGcAGGaGGUCGCAGCc -3' miRNA: 3'- aGUCUACuCcUGC-UCCgCUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 133418 | 0.67 | 0.965995 |
Target: 5'- cUCAGGaacuacaUGuuuuGGAUGGGGCGccguUCGCAGg -3' miRNA: 3'- -AGUCU-------ACu---CCUGCUCCGCu---AGCGUCg -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 86196 | 0.67 | 0.974745 |
Target: 5'- gCGGGccacGGugGAGGCGAaggGCGGCg -3' miRNA: 3'- aGUCUacu-CCugCUCCGCUag-CGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 99204 | 0.67 | 0.974745 |
Target: 5'- gCGGcgGAGGAUacGGCGGggucCGCGGUc -3' miRNA: 3'- aGUCuaCUCCUGcuCCGCUa---GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 66906 | 0.67 | 0.971578 |
Target: 5'- gCAGAUGAGGGgGAGGaaagccaaGCAGa -3' miRNA: 3'- aGUCUACUCCUgCUCCgcuag---CGUCg -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 195363 | 0.67 | 0.971852 |
Target: 5'- cCGGGUgaaggugacgcccGAGGACGAGGCGcccguaccguaAUCGgaGGCc -3' miRNA: 3'- aGUCUA-------------CUCCUGCUCCGC-----------UAGCg-UCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 71272 | 0.67 | 0.972125 |
Target: 5'- aUCGGcgGAGG-CGGGGgc--CGCGGCa -3' miRNA: 3'- -AGUCuaCUCCuGCUCCgcuaGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 190971 | 0.67 | 0.966307 |
Target: 5'- -gAGcAUGcuGGACGAGGCcGAgcgGCAGCa -3' miRNA: 3'- agUC-UACu-CCUGCUCCG-CUag-CGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 22172 | 0.67 | 0.972125 |
Target: 5'- -uGGAgaGGGACGAGGCGc-CGcCGGCc -3' miRNA: 3'- agUCUacUCCUGCUCCGCuaGC-GUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 167665 | 0.67 | 0.974745 |
Target: 5'- cCAGGUcGcAGGcCGAGGCGG-CGCcGCc -3' miRNA: 3'- aGUCUA-C-UCCuGCUCCGCUaGCGuCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 212220 | 0.67 | 0.974745 |
Target: 5'- ---cAUGuacAGGAUGGuGGCGGUgCGCAGCa -3' miRNA: 3'- agucUAC---UCCUGCU-CCGCUA-GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 135753 | 0.67 | 0.974745 |
Target: 5'- cCGGAcGuucccGGGAcCGaAGGCGGUgGCGGCa -3' miRNA: 3'- aGUCUaC-----UCCU-GC-UCCGCUAgCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 157029 | 0.67 | 0.969314 |
Target: 5'- gCAGGUuucGGGGGCGcGGUcgGAggagCGCGGCg -3' miRNA: 3'- aGUCUA---CUCCUGCuCCG--CUa---GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 133198 | 0.67 | 0.974745 |
Target: 5'- --cGAUcGGGACGAccGCGGUCGgGGCg -3' miRNA: 3'- aguCUAcUCCUGCUc-CGCUAGCgUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 167703 | 0.67 | 0.972125 |
Target: 5'- cUCGug-GAGGAgGcGGCGGUaGCAGCg -3' miRNA: 3'- -AGUcuaCUCCUgCuCCGCUAgCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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