miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 31451 0.67 0.963098
Target:  5'- aCGGG-GAGGACGAcuaugaGGgGuucagcUCGCAGCg -3'
miRNA:   3'- aGUCUaCUCCUGCU------CCgCu-----AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 190971 0.67 0.966307
Target:  5'- -gAGcAUGcuGGACGAGGCcGAgcgGCAGCa -3'
miRNA:   3'- agUC-UACu-CCUGCUCCG-CUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 157029 0.67 0.969314
Target:  5'- gCAGGUuucGGGGGCGcGGUcgGAggagCGCGGCg -3'
miRNA:   3'- aGUCUA---CUCCUGCuCCG--CUa---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 209082 0.67 0.969314
Target:  5'- cCGGucGAGGcgGCgGAGGCGGUggcCGCGGCg -3'
miRNA:   3'- aGUCuaCUCC--UG-CUCCGCUA---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 195363 0.67 0.971852
Target:  5'- cCGGGUgaaggugacgcccGAGGACGAGGCGcccguaccguaAUCGgaGGCc -3'
miRNA:   3'- aGUCUA-------------CUCCUGCUCCGC-----------UAGCg-UCG- -5'
14210 3' -54.4 NC_003521.1 + 22172 0.67 0.972125
Target:  5'- -uGGAgaGGGACGAGGCGc-CGcCGGCc -3'
miRNA:   3'- agUCUacUCCUGCUCCGCuaGC-GUCG- -5'
14210 3' -54.4 NC_003521.1 + 167665 0.67 0.974745
Target:  5'- cCAGGUcGcAGGcCGAGGCGG-CGCcGCc -3'
miRNA:   3'- aGUCUA-C-UCCuGCUCCGCUaGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 71972 0.67 0.963098
Target:  5'- gCAGAUGAGcccGGCGuccGUGAcgCGCAGCu -3'
miRNA:   3'- aGUCUACUC---CUGCuc-CGCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 236342 0.67 0.969314
Target:  5'- aCGGggGAGGACGAuaaaagaucGGgGGcCGCAGg -3'
miRNA:   3'- aGUCuaCUCCUGCU---------CCgCUaGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 120357 0.68 0.956053
Target:  5'- uUCGGAcgaagGAGGACGggaaGGGgGAUCgGgAGCg -3'
miRNA:   3'- -AGUCUa----CUCCUGC----UCCgCUAG-CgUCG- -5'
14210 3' -54.4 NC_003521.1 + 94376 0.68 0.94386
Target:  5'- cUCGGAcGAGGAggugUGGGGCauguuAUCGUAGCc -3'
miRNA:   3'- -AGUCUaCUCCU----GCUCCGc----UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 228038 0.68 0.952209
Target:  5'- aUCGGAgaucUGAGGGuaauCGGGGCGcacgCGCGGg -3'
miRNA:   3'- -AGUCU----ACUCCU----GCUCCGCua--GCGUCg -5'
14210 3' -54.4 NC_003521.1 + 147353 0.68 0.94386
Target:  5'- cCGGAgcucAGGACGGGGCguuuugGAUCGCAcGUc -3'
miRNA:   3'- aGUCUac--UCCUGCUCCG------CUAGCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 97493 0.68 0.93935
Target:  5'- gUAGAccagGAGGuACGAGaGCGAgaccUCGCAGa -3'
miRNA:   3'- aGUCUa---CUCC-UGCUC-CGCU----AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 136029 0.68 0.93935
Target:  5'- aUCAGc-GAGGugGcGGUGAUCGaggGGCa -3'
miRNA:   3'- -AGUCuaCUCCugCuCCGCUAGCg--UCG- -5'
14210 3' -54.4 NC_003521.1 + 172306 0.68 0.93935
Target:  5'- gUCcGGUGucGGugGcgccAGGcCGGUCGCGGCg -3'
miRNA:   3'- -AGuCUACu-CCugC----UCC-GCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 43663 0.68 0.956053
Target:  5'- gCAGAgagGAGGA-GAGGagGAgcaGCAGCa -3'
miRNA:   3'- aGUCUa--CUCCUgCUCCg-CUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 136976 0.68 0.94386
Target:  5'- cCAGccu-GGACGAGGCcGAgaCGCGGCc -3'
miRNA:   3'- aGUCuacuCCUGCUCCG-CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 88317 0.68 0.959681
Target:  5'- --cGAUGAGGAUGcGGGUcucgccGAagCGCAGCg -3'
miRNA:   3'- aguCUACUCCUGC-UCCG------CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 58020 0.68 0.959681
Target:  5'- -gAGAaGAGGACGAcgagGGCGcgCGCGuguuGCu -3'
miRNA:   3'- agUCUaCUCCUGCU----CCGCuaGCGU----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.