miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 92296 0.68 0.948146
Target:  5'- cUCGGGgaagGcgcGGGAgGAGGCGcagcCGCGGCa -3'
miRNA:   3'- -AGUCUa---C---UCCUgCUCCGCua--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 197573 0.68 0.948146
Target:  5'- -aGGAUGGcGAUGAGGCGGaUGgAGCg -3'
miRNA:   3'- agUCUACUcCUGCUCCGCUaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 167913 0.68 0.952209
Target:  5'- gCAGGUG-GGGCGccGCGAUCGaggGGUa -3'
miRNA:   3'- aGUCUACuCCUGCucCGCUAGCg--UCG- -5'
14210 3' -54.4 NC_003521.1 + 58020 0.68 0.959681
Target:  5'- -gAGAaGAGGACGAcgagGGCGcgCGCGuguuGCu -3'
miRNA:   3'- agUCUaCUCCUGCU----CCGCuaGCGU----CG- -5'
14210 3' -54.4 NC_003521.1 + 120357 0.68 0.956053
Target:  5'- uUCGGAcgaagGAGGACGggaaGGGgGAUCgGgAGCg -3'
miRNA:   3'- -AGUCUa----CUCCUGC----UCCgCUAG-CgUCG- -5'
14210 3' -54.4 NC_003521.1 + 228038 0.68 0.952209
Target:  5'- aUCGGAgaucUGAGGGuaauCGGGGCGcacgCGCGGg -3'
miRNA:   3'- -AGUCU----ACUCCU----GCUCCGCua--GCGUCg -5'
14210 3' -54.4 NC_003521.1 + 100590 0.68 0.952209
Target:  5'- gUAGGggccgGuGGACGAGGCGG-CGaAGCg -3'
miRNA:   3'- aGUCUa----CuCCUGCUCCGCUaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 43663 0.68 0.956053
Target:  5'- gCAGAgagGAGGA-GAGGagGAgcaGCAGCa -3'
miRNA:   3'- aGUCUa--CUCCUgCUCCg-CUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 137477 0.68 0.952209
Target:  5'- -uGGA--AGGGCGccGGCGuGUCGCGGCg -3'
miRNA:   3'- agUCUacUCCUGCu-CCGC-UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 119033 0.68 0.948146
Target:  5'- uUCGGAU-AGGGCG-GGCGGcgUCGgGGUg -3'
miRNA:   3'- -AGUCUAcUCCUGCuCCGCU--AGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 88317 0.68 0.959681
Target:  5'- --cGAUGAGGAUGcGGGUcucgccGAagCGCAGCg -3'
miRNA:   3'- aguCUACUCCUGC-UCCG------CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 74569 0.68 0.94386
Target:  5'- ----cUGAGGGCGGcgacggagcGGCGG-CGCGGCg -3'
miRNA:   3'- agucuACUCCUGCU---------CCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 6466 0.68 0.94386
Target:  5'- gCGGAUGAcGGcACggGAGGCaGGUCcgGCAGCg -3'
miRNA:   3'- aGUCUACU-CC-UG--CUCCG-CUAG--CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 136976 0.68 0.94386
Target:  5'- cCAGccu-GGACGAGGCcGAgaCGCGGCc -3'
miRNA:   3'- aGUCuacuCCUGCUCCG-CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 29643 0.68 0.956053
Target:  5'- -----aGAGGACGAGacCGAgCGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCc-GCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 56029 0.68 0.950611
Target:  5'- -gAGGUGAGGAUggGAGGgGAaugcugcccgaagUGCAGCg -3'
miRNA:   3'- agUCUACUCCUG--CUCCgCUa------------GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 222047 0.69 0.929648
Target:  5'- aUCGGcgGGGGGCaccaGCcGUCGCAGCa -3'
miRNA:   3'- -AGUCuaCUCCUGcuc-CGcUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 48719 0.69 0.919032
Target:  5'- cCGGGaGAGGugGAgacgccGGCGAcgcUGCAGCa -3'
miRNA:   3'- aGUCUaCUCCugCU------CCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 211462 0.69 0.929648
Target:  5'- gUCGGGgcAGGccAUGAGGCGcagggCGCAGCg -3'
miRNA:   3'- -AGUCUacUCC--UGCUCCGCua---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 84252 0.69 0.934612
Target:  5'- -gGGGUGGauGCGAuGGCGGUCGCugGGCa -3'
miRNA:   3'- agUCUACUccUGCU-CCGCUAGCG--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.