Results 101 - 120 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 28077 | 0.69 | 0.919032 |
Target: 5'- -gGGggGAGGACGAcGGCGGggaaGCcgAGCa -3' miRNA: 3'- agUCuaCUCCUGCU-CCGCUag--CG--UCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 178228 | 0.69 | 0.919032 |
Target: 5'- gCAGuucccgGGGGGgGuAGGCGAuguucaccaucUCGCAGCa -3' miRNA: 3'- aGUCua----CUCCUgC-UCCGCU-----------AGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 131096 | 0.69 | 0.913382 |
Target: 5'- gCGGGcuccgGAcGGCGGGGCGG-CGCGGCu -3' miRNA: 3'- aGUCUa----CUcCUGCUCCGCUaGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 93482 | 0.69 | 0.919032 |
Target: 5'- aUCGGAcGAGGACGAagaguccgagGGCGccuagcgcGUCGUGGUg -3' miRNA: 3'- -AGUCUaCUCCUGCU----------CCGC--------UAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 76314 | 0.69 | 0.913382 |
Target: 5'- gCAGcgGAGGugGcGGCGAcaGCuGCg -3' miRNA: 3'- aGUCuaCUCCugCuCCGCUagCGuCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 11167 | 0.69 | 0.913382 |
Target: 5'- gCAGccGAGGAUGAucccGGUGAg-GCAGCa -3' miRNA: 3'- aGUCuaCUCCUGCU----CCGCUagCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 91866 | 0.69 | 0.913382 |
Target: 5'- gCGGAccAGGACGGcGGCGG-CGguGCg -3' miRNA: 3'- aGUCUacUCCUGCU-CCGCUaGCguCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 166445 | 0.69 | 0.929648 |
Target: 5'- gUAGAUcGAGGGCGAGcCG-UCGCcGCa -3' miRNA: 3'- aGUCUA-CUCCUGCUCcGCuAGCGuCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 238466 | 0.69 | 0.929648 |
Target: 5'- cUCGGc---GGGCGGGGCGGagaCGCGGCc -3' miRNA: 3'- -AGUCuacuCCUGCUCCGCUa--GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 211462 | 0.69 | 0.929648 |
Target: 5'- gUCGGGgcAGGccAUGAGGCGcagggCGCAGCg -3' miRNA: 3'- -AGUCUacUCC--UGCUCCGCua---GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 122707 | 0.69 | 0.924454 |
Target: 5'- cUCGGc--GGGGCugGAGGCGGUCGUGGUc -3' miRNA: 3'- -AGUCuacUCCUG--CUCCGCUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 40222 | 0.69 | 0.924454 |
Target: 5'- cCGcGUGAGG-CGGGcaGCGGUCGCAGg -3' miRNA: 3'- aGUcUACUCCuGCUC--CGCUAGCGUCg -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 37523 | 0.69 | 0.929648 |
Target: 5'- aUCAGcgacguccugGGGGugGGcagcGGgGGUCGCGGCg -3' miRNA: 3'- -AGUCua--------CUCCugCU----CCgCUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 38238 | 0.69 | 0.929648 |
Target: 5'- cUCGGc---GGGCGGGGCGGagaCGCGGCc -3' miRNA: 3'- -AGUCuacuCCUGCUCCGCUa--GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 99316 | 0.69 | 0.933147 |
Target: 5'- gCAGGUccGGGACGAGGCGGgccaggugggcaccUCGC-GCc -3' miRNA: 3'- aGUCUAc-UCCUGCUCCGCU--------------AGCGuCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 76191 | 0.69 | 0.924454 |
Target: 5'- aCGGGUcGGGA---GGCGGUCGCGGUg -3' miRNA: 3'- aGUCUAcUCCUgcuCCGCUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 37432 | 0.69 | 0.934612 |
Target: 5'- -aGGcGUGgccGGGACcuGAGGCGAcCGCGGCg -3' miRNA: 3'- agUC-UAC---UCCUG--CUCCGCUaGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 84252 | 0.69 | 0.934612 |
Target: 5'- -gGGGUGGauGCGAuGGCGGUCGCugGGCa -3' miRNA: 3'- agUCUACUccUGCU-CCGCUAGCG--UCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 218683 | 0.69 | 0.929648 |
Target: 5'- cCGGuaaGAGGGCGGcGGCGAagGCGGa -3' miRNA: 3'- aGUCua-CUCCUGCU-CCGCUagCGUCg -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 62312 | 0.69 | 0.934613 |
Target: 5'- cCGGAUGGGcGACGAGGUac-CGCGacGCa -3' miRNA: 3'- aGUCUACUC-CUGCUCCGcuaGCGU--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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