miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 224015 0.7 0.907505
Target:  5'- gCAGcgGcGGGCccGGCGGUCGgGGCg -3'
miRNA:   3'- aGUCuaCuCCUGcuCCGCUAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 101974 0.7 0.907505
Target:  5'- -gAGAUGGGGuccaGcAGGCGGU-GCAGCu -3'
miRNA:   3'- agUCUACUCCug--C-UCCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 123359 0.7 0.907505
Target:  5'- cCGGGUGuGGAgGAGGCGG-CGgGGg -3'
miRNA:   3'- aGUCUACuCCUgCUCCGCUaGCgUCg -5'
14210 3' -54.4 NC_003521.1 + 178303 0.7 0.888536
Target:  5'- -aAGAUGAGGuccuGCGGGGUGAugaUCaCGGCg -3'
miRNA:   3'- agUCUACUCC----UGCUCCGCU---AGcGUCG- -5'
14210 3' -54.4 NC_003521.1 + 5405 0.7 0.888536
Target:  5'- cUCGGGggccucgcccGAGGACGAGGCGGagGaauCGGCg -3'
miRNA:   3'- -AGUCUa---------CUCCUGCUCCGCUagC---GUCG- -5'
14210 3' -54.4 NC_003521.1 + 170298 0.7 0.893139
Target:  5'- cCGGccGAGcGCGAGGCGGUCacgucgguguuuaaGCGGCu -3'
miRNA:   3'- aGUCuaCUCcUGCUCCGCUAG--------------CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98461 0.7 0.907505
Target:  5'- gUUGGAgGAGG-CGGcGGCGGcCGCGGCg -3'
miRNA:   3'- -AGUCUaCUCCuGCU-CCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 165245 0.7 0.901403
Target:  5'- gCGGAagagGAGGACGAGGacaggaGggCGCuGGCg -3'
miRNA:   3'- aGUCUa---CUCCUGCUCCg-----CuaGCG-UCG- -5'
14210 3' -54.4 NC_003521.1 + 17233 0.7 0.907505
Target:  5'- cUCGGAggccGAGGugGAGGCG--CGCcGUa -3'
miRNA:   3'- -AGUCUa---CUCCugCUCCGCuaGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 223935 0.7 0.907505
Target:  5'- gCGGccGAGGGgguCGAGGCGGcCGCGGg -3'
miRNA:   3'- aGUCuaCUCCU---GCUCCGCUaGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 91866 0.69 0.913382
Target:  5'- gCGGAccAGGACGGcGGCGG-CGguGCg -3'
miRNA:   3'- aGUCUacUCCUGCU-CCGCUaGCguCG- -5'
14210 3' -54.4 NC_003521.1 + 11167 0.69 0.913382
Target:  5'- gCAGccGAGGAUGAucccGGUGAg-GCAGCa -3'
miRNA:   3'- aGUCuaCUCCUGCU----CCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 28077 0.69 0.919032
Target:  5'- -gGGggGAGGACGAcGGCGGggaaGCcgAGCa -3'
miRNA:   3'- agUCuaCUCCUGCU-CCGCUag--CG--UCG- -5'
14210 3' -54.4 NC_003521.1 + 107243 0.69 0.924454
Target:  5'- gUAGAUGGuGGACGGGGUuuGAUUGU-GCg -3'
miRNA:   3'- aGUCUACU-CCUGCUCCG--CUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 127379 0.69 0.924454
Target:  5'- gCAGGUGcgugaugaAGGGCGgccacAGGCGGUggucgUGCAGCg -3'
miRNA:   3'- aGUCUAC--------UCCUGC-----UCCGCUA-----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 240450 0.69 0.924454
Target:  5'- cCGcGUGAGG-CGGGcaGCGGUCGCAGg -3'
miRNA:   3'- aGUcUACUCCuGCUC--CGCUAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 166445 0.69 0.929648
Target:  5'- gUAGAUcGAGGGCGAGcCG-UCGCcGCa -3'
miRNA:   3'- aGUCUA-CUCCUGCUCcGCuAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 238466 0.69 0.929648
Target:  5'- cUCGGc---GGGCGGGGCGGagaCGCGGCc -3'
miRNA:   3'- -AGUCuacuCCUGCUCCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 62312 0.69 0.934613
Target:  5'- cCGGAUGGGcGACGAGGUac-CGCGacGCa -3'
miRNA:   3'- aGUCUACUC-CUGCUCCGcuaGCGU--CG- -5'
14210 3' -54.4 NC_003521.1 + 218683 0.69 0.929648
Target:  5'- cCGGuaaGAGGGCGGcGGCGAagGCGGa -3'
miRNA:   3'- aGUCua-CUCCUGCU-CCGCUagCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.