miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 131096 0.69 0.913382
Target:  5'- gCGGGcuccgGAcGGCGGGGCGG-CGCGGCu -3'
miRNA:   3'- aGUCUa----CUcCUGCUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 11167 0.69 0.913382
Target:  5'- gCAGccGAGGAUGAucccGGUGAg-GCAGCa -3'
miRNA:   3'- aGUCuaCUCCUGCU----CCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 91866 0.69 0.913382
Target:  5'- gCGGAccAGGACGGcGGCGG-CGguGCg -3'
miRNA:   3'- aGUCUacUCCUGCU-CCGCUaGCguCG- -5'
14210 3' -54.4 NC_003521.1 + 222047 0.69 0.929648
Target:  5'- aUCGGcgGGGGGCaccaGCcGUCGCAGCa -3'
miRNA:   3'- -AGUCuaCUCCUGcuc-CGcUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 99316 0.69 0.933147
Target:  5'- gCAGGUccGGGACGAGGCGGgccaggugggcaccUCGC-GCc -3'
miRNA:   3'- aGUCUAc-UCCUGCUCCGCU--------------AGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 37523 0.69 0.929648
Target:  5'- aUCAGcgacguccugGGGGugGGcagcGGgGGUCGCGGCg -3'
miRNA:   3'- -AGUCua--------CUCCugCU----CCgCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 38238 0.69 0.929648
Target:  5'- cUCGGc---GGGCGGGGCGGagaCGCGGCc -3'
miRNA:   3'- -AGUCuacuCCUGCUCCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 122707 0.69 0.924454
Target:  5'- cUCGGc--GGGGCugGAGGCGGUCGUGGUc -3'
miRNA:   3'- -AGUCuacUCCUG--CUCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 40222 0.69 0.924454
Target:  5'- cCGcGUGAGG-CGGGcaGCGGUCGCAGg -3'
miRNA:   3'- aGUcUACUCCuGCUC--CGCUAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 93482 0.69 0.919032
Target:  5'- aUCGGAcGAGGACGAagaguccgagGGCGccuagcgcGUCGUGGUg -3'
miRNA:   3'- -AGUCUaCUCCUGCU----------CCGC--------UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 76191 0.69 0.924454
Target:  5'- aCGGGUcGGGA---GGCGGUCGCGGUg -3'
miRNA:   3'- aGUCUAcUCCUgcuCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 48719 0.69 0.919032
Target:  5'- cCGGGaGAGGugGAgacgccGGCGAcgcUGCAGCa -3'
miRNA:   3'- aGUCUaCUCCugCU------CCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 84252 0.69 0.934612
Target:  5'- -gGGGUGGauGCGAuGGCGGUCGCugGGCa -3'
miRNA:   3'- agUCUACUccUGCU-CCGCUAGCG--UCG- -5'
14210 3' -54.4 NC_003521.1 + 37432 0.69 0.934612
Target:  5'- -aGGcGUGgccGGGACcuGAGGCGAcCGCGGCg -3'
miRNA:   3'- agUC-UAC---UCCUG--CUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 76314 0.69 0.913382
Target:  5'- gCAGcgGAGGugGcGGCGAcaGCuGCg -3'
miRNA:   3'- aGUCuaCUCCugCuCCGCUagCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 88317 0.68 0.959681
Target:  5'- --cGAUGAGGAUGcGGGUcucgccGAagCGCAGCg -3'
miRNA:   3'- aguCUACUCCUGC-UCCG------CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 58020 0.68 0.959681
Target:  5'- -gAGAaGAGGACGAcgagGGCGcgCGCGuguuGCu -3'
miRNA:   3'- agUCUaCUCCUGCU----CCGCuaGCGU----CG- -5'
14210 3' -54.4 NC_003521.1 + 120357 0.68 0.956053
Target:  5'- uUCGGAcgaagGAGGACGggaaGGGgGAUCgGgAGCg -3'
miRNA:   3'- -AGUCUa----CUCCUGC----UCCgCUAG-CgUCG- -5'
14210 3' -54.4 NC_003521.1 + 100590 0.68 0.952209
Target:  5'- gUAGGggccgGuGGACGAGGCGG-CGaAGCg -3'
miRNA:   3'- aGUCUa----CuCCUGCUCCGCUaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 74569 0.68 0.94386
Target:  5'- ----cUGAGGGCGGcgacggagcGGCGG-CGCGGCg -3'
miRNA:   3'- agucuACUCCUGCU---------CCGCUaGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.