miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 43627 0.7 0.901403
Target:  5'- -----cGAGGACGAGGaGGagGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCCgCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98461 0.7 0.907505
Target:  5'- gUUGGAgGAGG-CGGcGGCGGcCGCGGCg -3'
miRNA:   3'- -AGUCUaCUCCuGCU-CCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 101974 0.7 0.907505
Target:  5'- -gAGAUGGGGuccaGcAGGCGGU-GCAGCu -3'
miRNA:   3'- agUCUACUCCug--C-UCCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 224015 0.7 0.907505
Target:  5'- gCAGcgGcGGGCccGGCGGUCGgGGCg -3'
miRNA:   3'- aGUCuaCuCCUGcuCCGCUAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 87570 0.7 0.907505
Target:  5'- -uGGAUGAcGGGC-AGGCGGgugCGCAcGCg -3'
miRNA:   3'- agUCUACU-CCUGcUCCGCUa--GCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 17233 0.7 0.907505
Target:  5'- cUCGGAggccGAGGugGAGGCG--CGCcGUa -3'
miRNA:   3'- -AGUCUa---CUCCugCUCCGCuaGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 123359 0.7 0.907505
Target:  5'- cCGGGUGuGGAgGAGGCGG-CGgGGg -3'
miRNA:   3'- aGUCUACuCCUgCUCCGCUaGCgUCg -5'
14210 3' -54.4 NC_003521.1 + 223935 0.7 0.907505
Target:  5'- gCGGccGAGGGgguCGAGGCGGcCGCGGg -3'
miRNA:   3'- aGUCuaCUCCU---GCUCCGCUaGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 141726 0.7 0.907505
Target:  5'- uUCAGAgggagaacugGAGGAUGAGGaagaCGAcaGCAGCa -3'
miRNA:   3'- -AGUCUa---------CUCCUGCUCC----GCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 216739 0.7 0.907505
Target:  5'- gCGGAgaGGGGAUGAGGCGA-CG-GGCu -3'
miRNA:   3'- aGUCUa-CUCCUGCUCCGCUaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 76314 0.69 0.913382
Target:  5'- gCAGcgGAGGugGcGGCGAcaGCuGCg -3'
miRNA:   3'- aGUCuaCUCCugCuCCGCUagCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 131096 0.69 0.913382
Target:  5'- gCGGGcuccgGAcGGCGGGGCGG-CGCGGCu -3'
miRNA:   3'- aGUCUa----CUcCUGCUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 11167 0.69 0.913382
Target:  5'- gCAGccGAGGAUGAucccGGUGAg-GCAGCa -3'
miRNA:   3'- aGUCuaCUCCUGCU----CCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 91866 0.69 0.913382
Target:  5'- gCGGAccAGGACGGcGGCGG-CGguGCg -3'
miRNA:   3'- aGUCUacUCCUGCU-CCGCUaGCguCG- -5'
14210 3' -54.4 NC_003521.1 + 48719 0.69 0.919032
Target:  5'- cCGGGaGAGGugGAgacgccGGCGAcgcUGCAGCa -3'
miRNA:   3'- aGUCUaCUCCugCU------CCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 178228 0.69 0.919032
Target:  5'- gCAGuucccgGGGGGgGuAGGCGAuguucaccaucUCGCAGCa -3'
miRNA:   3'- aGUCua----CUCCUgC-UCCGCU-----------AGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 28077 0.69 0.919032
Target:  5'- -gGGggGAGGACGAcGGCGGggaaGCcgAGCa -3'
miRNA:   3'- agUCuaCUCCUGCU-CCGCUag--CG--UCG- -5'
14210 3' -54.4 NC_003521.1 + 93482 0.69 0.919032
Target:  5'- aUCGGAcGAGGACGAagaguccgagGGCGccuagcgcGUCGUGGUg -3'
miRNA:   3'- -AGUCUaCUCCUGCU----------CCGC--------UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 127379 0.69 0.924454
Target:  5'- gCAGGUGcgugaugaAGGGCGgccacAGGCGGUggucgUGCAGCg -3'
miRNA:   3'- aGUCUAC--------UCCUGC-----UCCGCUA-----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 240450 0.69 0.924454
Target:  5'- cCGcGUGAGG-CGGGcaGCGGUCGCAGg -3'
miRNA:   3'- aGUcUACUCCuGCUC--CGCUAGCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.