miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 122707 0.69 0.924454
Target:  5'- cUCGGc--GGGGCugGAGGCGGUCGUGGUc -3'
miRNA:   3'- -AGUCuacUCCUG--CUCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 240450 0.69 0.924454
Target:  5'- cCGcGUGAGG-CGGGcaGCGGUCGCAGg -3'
miRNA:   3'- aGUcUACUCCuGCUC--CGCUAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 107243 0.69 0.924454
Target:  5'- gUAGAUGGuGGACGGGGUuuGAUUGU-GCg -3'
miRNA:   3'- aGUCUACU-CCUGCUCCG--CUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 40222 0.69 0.924454
Target:  5'- cCGcGUGAGG-CGGGcaGCGGUCGCAGg -3'
miRNA:   3'- aGUcUACUCCuGCUC--CGCUAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 166445 0.69 0.929648
Target:  5'- gUAGAUcGAGGGCGAGcCG-UCGCcGCa -3'
miRNA:   3'- aGUCUA-CUCCUGCUCcGCuAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 218683 0.69 0.929648
Target:  5'- cCGGuaaGAGGGCGGcGGCGAagGCGGa -3'
miRNA:   3'- aGUCua-CUCCUGCU-CCGCUagCGUCg -5'
14210 3' -54.4 NC_003521.1 + 238466 0.69 0.929648
Target:  5'- cUCGGc---GGGCGGGGCGGagaCGCGGCc -3'
miRNA:   3'- -AGUCuacuCCUGCUCCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 37523 0.69 0.929648
Target:  5'- aUCAGcgacguccugGGGGugGGcagcGGgGGUCGCGGCg -3'
miRNA:   3'- -AGUCua--------CUCCugCU----CCgCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 38238 0.69 0.929648
Target:  5'- cUCGGc---GGGCGGGGCGGagaCGCGGCc -3'
miRNA:   3'- -AGUCuacuCCUGCUCCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 211462 0.69 0.929648
Target:  5'- gUCGGGgcAGGccAUGAGGCGcagggCGCAGCg -3'
miRNA:   3'- -AGUCUacUCC--UGCUCCGCua---GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 222047 0.69 0.929648
Target:  5'- aUCGGcgGGGGGCaccaGCcGUCGCAGCa -3'
miRNA:   3'- -AGUCuaCUCCUGcuc-CGcUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 99316 0.69 0.933147
Target:  5'- gCAGGUccGGGACGAGGCGGgccaggugggcaccUCGC-GCc -3'
miRNA:   3'- aGUCUAc-UCCUGCUCCGCU--------------AGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 37432 0.69 0.934612
Target:  5'- -aGGcGUGgccGGGACcuGAGGCGAcCGCGGCg -3'
miRNA:   3'- agUC-UAC---UCCUG--CUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 84252 0.69 0.934612
Target:  5'- -gGGGUGGauGCGAuGGCGGUCGCugGGCa -3'
miRNA:   3'- agUCUACUccUGCU-CCGCUAGCG--UCG- -5'
14210 3' -54.4 NC_003521.1 + 62312 0.69 0.934613
Target:  5'- cCGGAUGGGcGACGAGGUac-CGCGacGCa -3'
miRNA:   3'- aGUCUACUC-CUGCUCCGcuaGCGU--CG- -5'
14210 3' -54.4 NC_003521.1 + 136029 0.68 0.93935
Target:  5'- aUCAGc-GAGGugGcGGUGAUCGaggGGCa -3'
miRNA:   3'- -AGUCuaCUCCugCuCCGCUAGCg--UCG- -5'
14210 3' -54.4 NC_003521.1 + 97493 0.68 0.93935
Target:  5'- gUAGAccagGAGGuACGAGaGCGAgaccUCGCAGa -3'
miRNA:   3'- aGUCUa---CUCC-UGCUC-CGCU----AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 172306 0.68 0.93935
Target:  5'- gUCcGGUGucGGugGcgccAGGcCGGUCGCGGCg -3'
miRNA:   3'- -AGuCUACu-CCugC----UCC-GCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 6466 0.68 0.94386
Target:  5'- gCGGAUGAcGGcACggGAGGCaGGUCcgGCAGCg -3'
miRNA:   3'- aGUCUACU-CC-UG--CUCCG-CUAG--CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 74569 0.68 0.94386
Target:  5'- ----cUGAGGGCGGcgacggagcGGCGG-CGCGGCg -3'
miRNA:   3'- agucuACUCCUGCU---------CCGCUaGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.