miRNA display CGI


Results 101 - 120 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 94376 0.68 0.94386
Target:  5'- cUCGGAcGAGGAggugUGGGGCauguuAUCGUAGCc -3'
miRNA:   3'- -AGUCUaCUCCU----GCUCCGc----UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 74569 0.68 0.94386
Target:  5'- ----cUGAGGGCGGcgacggagcGGCGG-CGCGGCg -3'
miRNA:   3'- agucuACUCCUGCU---------CCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 136976 0.68 0.94386
Target:  5'- cCAGccu-GGACGAGGCcGAgaCGCGGCc -3'
miRNA:   3'- aGUCuacuCCUGCUCCG-CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 92296 0.68 0.948146
Target:  5'- cUCGGGgaagGcgcGGGAgGAGGCGcagcCGCGGCa -3'
miRNA:   3'- -AGUCUa---C---UCCUgCUCCGCua--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 119033 0.68 0.948146
Target:  5'- uUCGGAU-AGGGCG-GGCGGcgUCGgGGUg -3'
miRNA:   3'- -AGUCUAcUCCUGCuCCGCU--AGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 197573 0.68 0.948146
Target:  5'- -aGGAUGGcGAUGAGGCGGaUGgAGCg -3'
miRNA:   3'- agUCUACUcCUGCUCCGCUaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 56029 0.68 0.950611
Target:  5'- -gAGGUGAGGAUggGAGGgGAaugcugcccgaagUGCAGCg -3'
miRNA:   3'- agUCUACUCCUG--CUCCgCUa------------GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 69685 0.68 0.952209
Target:  5'- uUCGGGUGAcGGugGuccuGGUgucGGUgGCGGCg -3'
miRNA:   3'- -AGUCUACU-CCugCu---CCG---CUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 198779 0.68 0.952209
Target:  5'- -----cGuGGGCGAGGUGGguaGCAGCu -3'
miRNA:   3'- agucuaCuCCUGCUCCGCUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 167913 0.68 0.952209
Target:  5'- gCAGGUG-GGGCGccGCGAUCGaggGGUa -3'
miRNA:   3'- aGUCUACuCCUGCucCGCUAGCg--UCG- -5'
14210 3' -54.4 NC_003521.1 + 137477 0.68 0.952209
Target:  5'- -uGGA--AGGGCGccGGCGuGUCGCGGCg -3'
miRNA:   3'- agUCUacUCCUGCu-CCGC-UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 228038 0.68 0.952209
Target:  5'- aUCGGAgaucUGAGGGuaauCGGGGCGcacgCGCGGg -3'
miRNA:   3'- -AGUCU----ACUCCU----GCUCCGCua--GCGUCg -5'
14210 3' -54.4 NC_003521.1 + 100590 0.68 0.952209
Target:  5'- gUAGGggccgGuGGACGAGGCGG-CGaAGCg -3'
miRNA:   3'- aGUCUa----CuCCUGCUCCGCUaGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 123436 0.68 0.956053
Target:  5'- gCGGGauAGGACgGAGGCGc-CGUAGCg -3'
miRNA:   3'- aGUCUacUCCUG-CUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 109357 0.68 0.956053
Target:  5'- gCAGGagGccGACGAGGcCGAgagCGCGGCc -3'
miRNA:   3'- aGUCUa-CucCUGCUCC-GCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 120357 0.68 0.956053
Target:  5'- uUCGGAcgaagGAGGACGggaaGGGgGAUCgGgAGCg -3'
miRNA:   3'- -AGUCUa----CUCCUGC----UCCgCUAG-CgUCG- -5'
14210 3' -54.4 NC_003521.1 + 29643 0.68 0.956053
Target:  5'- -----aGAGGACGAGacCGAgCGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCc-GCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 43663 0.68 0.956053
Target:  5'- gCAGAgagGAGGA-GAGGagGAgcaGCAGCa -3'
miRNA:   3'- aGUCUa--CUCCUgCUCCg-CUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 58020 0.68 0.959681
Target:  5'- -gAGAaGAGGACGAcgagGGCGcgCGCGuguuGCu -3'
miRNA:   3'- agUCUaCUCCUGCU----CCGCuaGCGU----CG- -5'
14210 3' -54.4 NC_003521.1 + 88317 0.68 0.959681
Target:  5'- --cGAUGAGGAUGcGGGUcucgccGAagCGCAGCg -3'
miRNA:   3'- aguCUACUCCUGC-UCCG------CUa-GCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.