Results 81 - 100 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 167913 | 0.68 | 0.952209 |
Target: 5'- gCAGGUG-GGGCGccGCGAUCGaggGGUa -3' miRNA: 3'- aGUCUACuCCUGCucCGCUAGCg--UCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 228038 | 0.68 | 0.952209 |
Target: 5'- aUCGGAgaucUGAGGGuaauCGGGGCGcacgCGCGGg -3' miRNA: 3'- -AGUCU----ACUCCU----GCUCCGCua--GCGUCg -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 137477 | 0.68 | 0.952209 |
Target: 5'- -uGGA--AGGGCGccGGCGuGUCGCGGCg -3' miRNA: 3'- agUCUacUCCUGCu-CCGC-UAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 100590 | 0.68 | 0.952209 |
Target: 5'- gUAGGggccgGuGGACGAGGCGG-CGaAGCg -3' miRNA: 3'- aGUCUa----CuCCUGCUCCGCUaGCgUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 56029 | 0.68 | 0.950611 |
Target: 5'- -gAGGUGAGGAUggGAGGgGAaugcugcccgaagUGCAGCg -3' miRNA: 3'- agUCUACUCCUG--CUCCgCUa------------GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 92296 | 0.68 | 0.948146 |
Target: 5'- cUCGGGgaagGcgcGGGAgGAGGCGcagcCGCGGCa -3' miRNA: 3'- -AGUCUa---C---UCCUgCUCCGCua--GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 197573 | 0.68 | 0.948146 |
Target: 5'- -aGGAUGGcGAUGAGGCGGaUGgAGCg -3' miRNA: 3'- agUCUACUcCUGCUCCGCUaGCgUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 119033 | 0.68 | 0.948146 |
Target: 5'- uUCGGAU-AGGGCG-GGCGGcgUCGgGGUg -3' miRNA: 3'- -AGUCUAcUCCUGCuCCGCU--AGCgUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 94376 | 0.68 | 0.94386 |
Target: 5'- cUCGGAcGAGGAggugUGGGGCauguuAUCGUAGCc -3' miRNA: 3'- -AGUCUaCUCCU----GCUCCGc----UAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 136976 | 0.68 | 0.94386 |
Target: 5'- cCAGccu-GGACGAGGCcGAgaCGCGGCc -3' miRNA: 3'- aGUCuacuCCUGCUCCG-CUa-GCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 74569 | 0.68 | 0.94386 |
Target: 5'- ----cUGAGGGCGGcgacggagcGGCGG-CGCGGCg -3' miRNA: 3'- agucuACUCCUGCU---------CCGCUaGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 6466 | 0.68 | 0.94386 |
Target: 5'- gCGGAUGAcGGcACggGAGGCaGGUCcgGCAGCg -3' miRNA: 3'- aGUCUACU-CC-UG--CUCCG-CUAG--CGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 147353 | 0.68 | 0.94386 |
Target: 5'- cCGGAgcucAGGACGGGGCguuuugGAUCGCAcGUc -3' miRNA: 3'- aGUCUac--UCCUGCUCCG------CUAGCGU-CG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 172306 | 0.68 | 0.93935 |
Target: 5'- gUCcGGUGucGGugGcgccAGGcCGGUCGCGGCg -3' miRNA: 3'- -AGuCUACu-CCugC----UCC-GCUAGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 97493 | 0.68 | 0.93935 |
Target: 5'- gUAGAccagGAGGuACGAGaGCGAgaccUCGCAGa -3' miRNA: 3'- aGUCUa---CUCC-UGCUC-CGCU----AGCGUCg -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 136029 | 0.68 | 0.93935 |
Target: 5'- aUCAGc-GAGGugGcGGUGAUCGaggGGCa -3' miRNA: 3'- -AGUCuaCUCCugCuCCGCUAGCg--UCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 62312 | 0.69 | 0.934613 |
Target: 5'- cCGGAUGGGcGACGAGGUac-CGCGacGCa -3' miRNA: 3'- aGUCUACUC-CUGCUCCGcuaGCGU--CG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 84252 | 0.69 | 0.934612 |
Target: 5'- -gGGGUGGauGCGAuGGCGGUCGCugGGCa -3' miRNA: 3'- agUCUACUccUGCU-CCGCUAGCG--UCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 37432 | 0.69 | 0.934612 |
Target: 5'- -aGGcGUGgccGGGACcuGAGGCGAcCGCGGCg -3' miRNA: 3'- agUC-UAC---UCCUG--CUCCGCUaGCGUCG- -5' |
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14210 | 3' | -54.4 | NC_003521.1 | + | 99316 | 0.69 | 0.933147 |
Target: 5'- gCAGGUccGGGACGAGGCGGgccaggugggcaccUCGC-GCc -3' miRNA: 3'- aGUCUAc-UCCUGCUCCGCU--------------AGCGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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