miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 84252 0.69 0.934612
Target:  5'- -gGGGUGGauGCGAuGGCGGUCGCugGGCa -3'
miRNA:   3'- agUCUACUccUGCU-CCGCUAGCG--UCG- -5'
14210 3' -54.4 NC_003521.1 + 85861 0.72 0.82881
Target:  5'- gCAGAUGAugcaGGGCaccAGGCGcUCGCGGUa -3'
miRNA:   3'- aGUCUACU----CCUGc--UCCGCuAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 86196 0.67 0.974745
Target:  5'- gCGGGccacGGugGAGGCGAaggGCGGCg -3'
miRNA:   3'- aGUCUacu-CCugCUCCGCUag-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 87378 0.73 0.758243
Target:  5'- -gAGGUgGAGGACGAGGCGG-CGgAGg -3'
miRNA:   3'- agUCUA-CUCCUGCUCCGCUaGCgUCg -5'
14210 3' -54.4 NC_003521.1 + 87570 0.7 0.907505
Target:  5'- -uGGAUGAcGGGC-AGGCGGgugCGCAcGCg -3'
miRNA:   3'- agUCUACU-CCUGcUCCGCUa--GCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 88057 0.8 0.413323
Target:  5'- gCGGAUGAGGuCGcGGUGGUCgGCGGCg -3'
miRNA:   3'- aGUCUACUCCuGCuCCGCUAG-CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 88317 0.68 0.959681
Target:  5'- --cGAUGAGGAUGcGGGUcucgccGAagCGCAGCg -3'
miRNA:   3'- aguCUACUCCUGC-UCCG------CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 91741 0.71 0.860244
Target:  5'- gUAGAggcUGAGGGCGu-GCGAgagCGCGGCc -3'
miRNA:   3'- aGUCU---ACUCCUGCucCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 91866 0.69 0.913382
Target:  5'- gCGGAccAGGACGGcGGCGG-CGguGCg -3'
miRNA:   3'- aGUCUacUCCUGCU-CCGCUaGCguCG- -5'
14210 3' -54.4 NC_003521.1 + 91998 0.79 0.466246
Target:  5'- cUCGGccGAGGGC-AGGCGGUCGCcGCg -3'
miRNA:   3'- -AGUCuaCUCCUGcUCCGCUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 92001 0.73 0.739368
Target:  5'- aCGGAgcggGAGcGGCGAGGCGcg-GCGGCg -3'
miRNA:   3'- aGUCUa---CUC-CUGCUCCGCuagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 92296 0.68 0.948146
Target:  5'- cUCGGGgaagGcgcGGGAgGAGGCGcagcCGCGGCa -3'
miRNA:   3'- -AGUCUa---C---UCCUgCUCCGCua--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 93482 0.69 0.919032
Target:  5'- aUCGGAcGAGGACGAagaguccgagGGCGccuagcgcGUCGUGGUg -3'
miRNA:   3'- -AGUCUaCUCCUGCU----------CCGC--------UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 93900 0.71 0.867625
Target:  5'- -gAGGgcauGGGCGuGGCuGGUCGCGGCa -3'
miRNA:   3'- agUCUacu-CCUGCuCCG-CUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 93982 0.72 0.806885
Target:  5'- gCGGAggcGAGGACGAGGCGccccccagacaggCGgAGCg -3'
miRNA:   3'- aGUCUa--CUCCUGCUCCGCua-----------GCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 94376 0.68 0.94386
Target:  5'- cUCGGAcGAGGAggugUGGGGCauguuAUCGUAGCc -3'
miRNA:   3'- -AGUCUaCUCCU----GCUCCGc----UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 97493 0.68 0.93935
Target:  5'- gUAGAccagGAGGuACGAGaGCGAgaccUCGCAGa -3'
miRNA:   3'- aGUCUa---CUCC-UGCUC-CGCU----AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 97529 0.66 0.98418
Target:  5'- cUCGGGgu-GGuCGAGGCGcucgaacaugcgcggGUCGCAGg -3'
miRNA:   3'- -AGUCUacuCCuGCUCCGC---------------UAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 98226 0.66 0.983454
Target:  5'- gCGGcGUGGGaGGCgggGAGGCGGggGCGGCc -3'
miRNA:   3'- aGUC-UACUC-CUG---CUCCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98300 0.7 0.874804
Target:  5'- cUCAGGgaaGAGGAgGAaGUGGUgGCGGCg -3'
miRNA:   3'- -AGUCUa--CUCCUgCUcCGCUAgCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.