Results 81 - 100 of 191 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 98461 | 0.7 | 0.907505 |
Target: 5'- gUUGGAgGAGG-CGGcGGCGGcCGCGGCg -3' miRNA: 3'- -AGUCUaCUCCuGCU-CCGCUaGCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 98462 | 0.67 | 0.969314 |
Target: 5'- -----aGAGGAgGAGGUaGUCGUAGUg -3' miRNA: 3'- agucuaCUCCUgCUCCGcUAGCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 98575 | 0.72 | 0.811185 |
Target: 5'- gUCGGccGAGGAgGAGcgggcccGCGAgCGCAGCg -3' miRNA: 3'- -AGUCuaCUCCUgCUC-------CGCUaGCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 98622 | 0.7 | 0.895079 |
Target: 5'- --cGAgGAGGGCGAGaGCGGcgGCGGCg -3' miRNA: 3'- aguCUaCUCCUGCUC-CGCUagCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 99204 | 0.67 | 0.974745 |
Target: 5'- gCGGcgGAGGAUacGGCGGggucCGCGGUc -3' miRNA: 3'- aGUCuaCUCCUGcuCCGCUa---GCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 99316 | 0.69 | 0.933147 |
Target: 5'- gCAGGUccGGGACGAGGCGGgccaggugggcaccUCGC-GCc -3' miRNA: 3'- aGUCUAc-UCCUGCUCCGCU--------------AGCGuCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 99344 | 0.66 | 0.985223 |
Target: 5'- --uGAUGAGGAgGaAGGCGGUgagGCuGCu -3' miRNA: 3'- aguCUACUCCUgC-UCCGCUAg--CGuCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 100590 | 0.68 | 0.952209 |
Target: 5'- gUAGGggccgGuGGACGAGGCGG-CGaAGCg -3' miRNA: 3'- aGUCUa----CuCCUGCUCCGCUaGCgUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 101794 | 0.71 | 0.844109 |
Target: 5'- gUCAGuUGGGcGCGcacgaagcccaggGGGCGGUCGCGGUa -3' miRNA: 3'- -AGUCuACUCcUGC-------------UCCGCUAGCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 101974 | 0.7 | 0.907505 |
Target: 5'- -gAGAUGGGGuccaGcAGGCGGU-GCAGCu -3' miRNA: 3'- agUCUACUCCug--C-UCCGCUAgCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 102930 | 0.77 | 0.571216 |
Target: 5'- aCGGuuUGAGGGcCGAGGCG-UCGCGGUc -3' miRNA: 3'- aGUCu-ACUCCU-GCUCCGCuAGCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 102964 | 0.66 | 0.983454 |
Target: 5'- cUCGGGcgucGGGGcucugGCGGGGCGGcccagcCGCGGCg -3' miRNA: 3'- -AGUCUa---CUCC-----UGCUCCGCUa-----GCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 104443 | 0.7 | 0.895079 |
Target: 5'- gCGGccGAGGugGAGuGUaggaaGUCGCAGCg -3' miRNA: 3'- aGUCuaCUCCugCUC-CGc----UAGCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 107243 | 0.69 | 0.924454 |
Target: 5'- gUAGAUGGuGGACGGGGUuuGAUUGU-GCg -3' miRNA: 3'- aGUCUACU-CCUGCUCCG--CUAGCGuCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 109357 | 0.68 | 0.956053 |
Target: 5'- gCAGGagGccGACGAGGcCGAgagCGCGGCc -3' miRNA: 3'- aGUCUa-CucCUGCUCC-GCUa--GCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 110183 | 0.66 | 0.981528 |
Target: 5'- aCAGGagguUGGGGugGAGGC---CGCuGGCg -3' miRNA: 3'- aGUCU----ACUCCugCUCCGcuaGCG-UCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 115928 | 0.67 | 0.963098 |
Target: 5'- -gAGGUGAGGccaguacgguUGGGGCGucUUGCGGCu -3' miRNA: 3'- agUCUACUCCu---------GCUCCGCu-AGCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 117939 | 0.74 | 0.710406 |
Target: 5'- aCGGggGAGGAgGAGaGCaucAUCGCGGCg -3' miRNA: 3'- aGUCuaCUCCUgCUC-CGc--UAGCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 118698 | 0.66 | 0.981528 |
Target: 5'- gCuGGUgGAGGGCaggcucauGGGCGAggggCGCGGCa -3' miRNA: 3'- aGuCUA-CUCCUGc-------UCCGCUa---GCGUCG- -5' |
|||||||
14210 | 3' | -54.4 | NC_003521.1 | + | 119033 | 0.68 | 0.948146 |
Target: 5'- uUCGGAU-AGGGCG-GGCGGcgUCGgGGUg -3' miRNA: 3'- -AGUCUAcUCCUGCuCCGCU--AGCgUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home