miRNA display CGI


Results 101 - 120 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 119312 0.72 0.785735
Target:  5'- cCAGGUGAGG-CGGauGGUGAUgCGCAcGCg -3'
miRNA:   3'- aGUCUACUCCuGCU--CCGCUA-GCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 119520 0.66 0.97944
Target:  5'- gUCAGGUGcGGGuACGGGuuGugcCGCAGCa -3'
miRNA:   3'- -AGUCUAC-UCC-UGCUCcgCua-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 120357 0.68 0.956053
Target:  5'- uUCGGAcgaagGAGGACGggaaGGGgGAUCgGgAGCg -3'
miRNA:   3'- -AGUCUa----CUCCUGC----UCCgCUAG-CgUCG- -5'
14210 3' -54.4 NC_003521.1 + 120955 0.73 0.758243
Target:  5'- -aGGGgcaGGGGGCGGGGCGGUuUGCGGUc -3'
miRNA:   3'- agUCUa--CUCCUGCUCCGCUA-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 121302 0.66 0.985223
Target:  5'- gCAGAUGAGGcCGAaGUGuUCGUGGg -3'
miRNA:   3'- aGUCUACUCCuGCUcCGCuAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 122707 0.69 0.924454
Target:  5'- cUCGGc--GGGGCugGAGGCGGUCGUGGUc -3'
miRNA:   3'- -AGUCuacUCCUG--CUCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 123221 0.76 0.620982
Target:  5'- -aGGAcGGGGGCGgcgguAGGUGGUCGUAGCg -3'
miRNA:   3'- agUCUaCUCCUGC-----UCCGCUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 123359 0.7 0.907505
Target:  5'- cCGGGUGuGGAgGAGGCGG-CGgGGg -3'
miRNA:   3'- aGUCUACuCCUgCUCCGCUaGCgUCg -5'
14210 3' -54.4 NC_003521.1 + 123436 0.68 0.956053
Target:  5'- gCGGGauAGGACgGAGGCGc-CGUAGCg -3'
miRNA:   3'- aGUCUacUCCUG-CUCCGCuaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126435 0.66 0.977181
Target:  5'- cCAGGcggucGAGGAUGAGGaagaGAaacaGCAGCg -3'
miRNA:   3'- aGUCUa----CUCCUGCUCCg---CUag--CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126626 0.66 0.985223
Target:  5'- aCGGcgauGGACGgucGGGUGAcgCGCAGCa -3'
miRNA:   3'- aGUCuacuCCUGC---UCCGCUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126825 0.66 0.981528
Target:  5'- gCAGAaGAGGA-GAGG--GUUGCAGCc -3'
miRNA:   3'- aGUCUaCUCCUgCUCCgcUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 127379 0.69 0.924454
Target:  5'- gCAGGUGcgugaugaAGGGCGgccacAGGCGGUggucgUGCAGCg -3'
miRNA:   3'- aGUCUAC--------UCCUGC-----UCCGCUA-----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 129889 0.66 0.977181
Target:  5'- -gGGAggagGAGGACGAcgacggGGCGGcCGCGcGCc -3'
miRNA:   3'- agUCUa---CUCCUGCU------CCGCUaGCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 131067 0.66 0.985223
Target:  5'- -uGGAcGcGGugGcGGCGAcCGCGGCu -3'
miRNA:   3'- agUCUaCuCCugCuCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 131096 0.69 0.913382
Target:  5'- gCGGGcuccgGAcGGCGGGGCGG-CGCGGCu -3'
miRNA:   3'- aGUCUa----CUcCUGCUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 131753 0.74 0.710406
Target:  5'- aCGGccugGAGGACcAGGCGGUgaucCGCAGCg -3'
miRNA:   3'- aGUCua--CUCCUGcUCCGCUA----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 133198 0.67 0.974745
Target:  5'- --cGAUcGGGACGAccGCGGUCGgGGCg -3'
miRNA:   3'- aguCUAcUCCUGCUc-CGCUAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 133418 0.67 0.965995
Target:  5'- cUCAGGaacuacaUGuuuuGGAUGGGGCGccguUCGCAGg -3'
miRNA:   3'- -AGUCU-------ACu---CCUGCUCCGCu---AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 133713 0.7 0.874804
Target:  5'- -uGGAcGAGGACGAGGUGG--GCAGg -3'
miRNA:   3'- agUCUaCUCCUGCUCCGCUagCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.