miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 147353 0.68 0.94386
Target:  5'- cCGGAgcucAGGACGGGGCguuuugGAUCGCAcGUc -3'
miRNA:   3'- aGUCUac--UCCUGCUCCG------CUAGCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 146875 0.66 0.983268
Target:  5'- cCAGAgGAGGAagccagaCGAcGGCGG--GCAGCg -3'
miRNA:   3'- aGUCUaCUCCU-------GCU-CCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 146716 0.66 0.981528
Target:  5'- -aGGAUGAGGAgGGGGgaggGGUUGUuGCg -3'
miRNA:   3'- agUCUACUCCUgCUCCg---CUAGCGuCG- -5'
14210 3' -54.4 NC_003521.1 + 142181 0.66 0.98418
Target:  5'- -aAGAaGAGGACGAGGaggaaGAagaggaggagcgacgUgGCGGCa -3'
miRNA:   3'- agUCUaCUCCUGCUCCg----CU---------------AgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 141726 0.7 0.907505
Target:  5'- uUCAGAgggagaacugGAGGAUGAGGaagaCGAcaGCAGCa -3'
miRNA:   3'- -AGUCUa---------CUCCUGCUCC----GCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 140151 0.66 0.983454
Target:  5'- -gAGAUGcAGGAggUGGGGUGGUucuugcgcuucUGCAGCu -3'
miRNA:   3'- agUCUAC-UCCU--GCUCCGCUA-----------GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 137477 0.68 0.952209
Target:  5'- -uGGA--AGGGCGccGGCGuGUCGCGGCg -3'
miRNA:   3'- agUCUacUCCUGCu-CCGC-UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 136976 0.68 0.94386
Target:  5'- cCAGccu-GGACGAGGCcGAgaCGCGGCc -3'
miRNA:   3'- aGUCuacuCCUGCUCCG-CUa-GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 136029 0.68 0.93935
Target:  5'- aUCAGc-GAGGugGcGGUGAUCGaggGGCa -3'
miRNA:   3'- -AGUCuaCUCCugCuCCGCUAGCg--UCG- -5'
14210 3' -54.4 NC_003521.1 + 135753 0.67 0.974745
Target:  5'- cCGGAcGuucccGGGAcCGaAGGCGGUgGCGGCa -3'
miRNA:   3'- aGUCUaC-----UCCU-GC-UCCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 134505 0.71 0.867625
Target:  5'- gCGGAUGAGG-C-AGGCGAUgCGCacGGCc -3'
miRNA:   3'- aGUCUACUCCuGcUCCGCUA-GCG--UCG- -5'
14210 3' -54.4 NC_003521.1 + 133713 0.7 0.874804
Target:  5'- -uGGAcGAGGACGAGGUGG--GCAGg -3'
miRNA:   3'- agUCUaCUCCUGCUCCGCUagCGUCg -5'
14210 3' -54.4 NC_003521.1 + 133418 0.67 0.965995
Target:  5'- cUCAGGaacuacaUGuuuuGGAUGGGGCGccguUCGCAGg -3'
miRNA:   3'- -AGUCU-------ACu---CCUGCUCCGCu---AGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 133198 0.67 0.974745
Target:  5'- --cGAUcGGGACGAccGCGGUCGgGGCg -3'
miRNA:   3'- aguCUAcUCCUGCUc-CGCUAGCgUCG- -5'
14210 3' -54.4 NC_003521.1 + 131753 0.74 0.710406
Target:  5'- aCGGccugGAGGACcAGGCGGUgaucCGCAGCg -3'
miRNA:   3'- aGUCua--CUCCUGcUCCGCUA----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 131096 0.69 0.913382
Target:  5'- gCGGGcuccgGAcGGCGGGGCGG-CGCGGCu -3'
miRNA:   3'- aGUCUa----CUcCUGCUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 131067 0.66 0.985223
Target:  5'- -uGGAcGcGGugGcGGCGAcCGCGGCu -3'
miRNA:   3'- agUCUaCuCCugCuCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 129889 0.66 0.977181
Target:  5'- -gGGAggagGAGGACGAcgacggGGCGGcCGCGcGCc -3'
miRNA:   3'- agUCUa---CUCCUGCU------CCGCUaGCGU-CG- -5'
14210 3' -54.4 NC_003521.1 + 127379 0.69 0.924454
Target:  5'- gCAGGUGcgugaugaAGGGCGgccacAGGCGGUggucgUGCAGCg -3'
miRNA:   3'- aGUCUAC--------UCCUGC-----UCCGCUA-----GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 126825 0.66 0.981528
Target:  5'- gCAGAaGAGGA-GAGG--GUUGCAGCc -3'
miRNA:   3'- aGUCUaCUCCUgCUCCgcUAGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.